View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6997_low_1 (Length: 373)
Name: NF6997_low_1
Description: NF6997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6997_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 48 - 373
Target Start/End: Complemental strand, 40858928 - 40858603
Alignment:
| Q |
48 |
acaaactacatggtaaattcatcaaagatgagttgttctagatcacaacctttgttttatctcctaagcatgatatgactataaatagtggctcttcaag |
147 |
Q |
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| T |
40858928 |
acaaactacatggtgaattcatcaaagatgagttgttctagatcacaacctttattttatctcctaagcatgatatgactataaatagtggctcttcaag |
40858829 |
T |
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| Q |
148 |
atcactttatacagccgttgattatagatgtgagatgttttatctcctgaagtacatgatatgatttgaagtggtagctcttcagaatcactttctaacg |
247 |
Q |
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| T |
40858828 |
atcactttatacagccgttgattatagatgtgagatgttttatctcctgaagtacatgatatgatttgaagtggtagctcttcagaatcactttctaacg |
40858729 |
T |
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| Q |
248 |
cctttgattctagatgtgacatatgtcataatttcatgatttaaaggtaaacaagaatctcaataggttcttctttcaaatttatatttgaaggnnnnnn |
347 |
Q |
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| T |
40858728 |
cctttgattctaggtgtgacatatgtcgtaatttcatgatttaaaggtaaacaagaatctcaataggttcttctttcaaatttacatttgaaggtttttt |
40858629 |
T |
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| Q |
348 |
nngttatggttatcaaagattcatct |
373 |
Q |
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| T |
40858628 |
ttgttatggttatcaaagattcatct |
40858603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40858995 - 40858945
Alignment:
| Q |
1 |
caagatttgttcgaagaataatgtggtctatctaactatgtaaggggacaa |
51 |
Q |
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| T |
40858995 |
caagatttgttggaagaataacgtggtctatctaactatgtaaggggacaa |
40858945 |
T |
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