View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6997_low_12 (Length: 201)
Name: NF6997_low_12
Description: NF6997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6997_low_12 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 18342813 - 18342984
Alignment:
| Q |
15 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342813 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
18342912 |
T |
|
| Q |
115 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342913 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
18342984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 48288757 - 48288862
Alignment:
| Q |
15 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
114 |
Q |
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|||||||||||||||||||||| ||| || ||||||||||||||||||| ||| |||| | ||| |||||||||||||||||||||||||||||| |
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| T |
48288757 |
atcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataatt-gactcctaatcacttcagatctttctaaagatgaattt |
48288851 |
T |
|
| Q |
115 |
ggtactgcttt |
125 |
Q |
| |
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| |||| |||| |
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| T |
48288852 |
gatactccttt |
48288862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 36840586 - 36840757
Alignment:
| Q |
15 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840586 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
36840685 |
T |
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| Q |
115 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840686 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
36840757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 164551 - 164380
Alignment:
| Q |
15 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
164551 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaattt |
164452 |
T |
|
| Q |
115 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
186 |
Q |
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| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
164451 |
gatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
164380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 14249175 - 14249346
Alignment:
| Q |
15 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaattt |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
14249175 |
atcatcatactttattattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaattt |
14249274 |
T |
|
| Q |
115 |
ggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatg |
186 |
Q |
| |
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| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14249275 |
gatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatg |
14249346 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
| Q |
79 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
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| Q |
179 |
ctcctatg |
186 |
Q |
| |
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|||||||| |
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|
| T |
46699227 |
ctcctatg |
46699234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 873 - 733
Alignment:
| Q |
46 |
cgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaa |
145 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || |
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| T |
873 |
cgtttgagttctttacaagtacgtacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataa |
774 |
T |
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| Q |
146 |
tgtcaccaatataagcataccgtcgattactagctcctatg |
186 |
Q |
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||||||||||| |||||| || |||||||||||||||||| |
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| T |
773 |
cgtcaccaatatgagcatatcggcgattactagctcctatg |
733 |
T |
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