View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6997_low_2 (Length: 210)
Name: NF6997_low_2
Description: NF6997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6997_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 15076717 - 15076917
Alignment:
| Q |
1 |
attccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgataattttgtgtcatattggattt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15076717 |
attccatttccttcacttgccaagtcaattcaagactccaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcatattggattt |
15076816 |
T |
|
| Q |
101 |
tcattaataaaataaggtcaaaacatccatctttaccggtattaagcttggaggaaacttttgaaagtttttgtaatggggtaagtctgtttggttcatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| | | || ||||||||||| |
|
|
| T |
15076817 |
tcattaataaaataaggtcaaaacatccatctttaccagttttaagcttagaggaaacttttgaaagtttttgtaatgggattactccatttggttcatt |
15076916 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
15076917 |
t |
15076917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 15171796 - 15171593
Alignment:
| Q |
1 |
attccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagt---ttatataagtagaaatccatttgataattttgtgtcatattgga |
97 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15171796 |
attccatttccttcacttgccaagtcaattcaagagtccaattgtaagatagtagtttatataagtagaaatccatttgatacttttgtgtcatattgga |
15171697 |
T |
|
| Q |
98 |
ttttcattaataaaataaggtcaaaacatccatctttaccggtattaagcttggaggaaacttttgaaagtttttgtaatggggtaagtctgtttggttc |
197 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||| | || |||||||| |
|
|
| T |
15171696 |
gtttcgttaataaaataaggtcaaaacatccatctttatcagttttaagcttagaggaaacttttgaaagtttttgtaatggggttactccatttggttc |
15171597 |
T |
|
| Q |
198 |
attt |
201 |
Q |
| |
|
|||| |
|
|
| T |
15171596 |
attt |
15171593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 15168958 - 15168868
Alignment:
| Q |
1 |
attccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgataattttgtgtcat |
91 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15168958 |
attccattttcttcacttgccaagtcgattcaagagtctaattgtaagatagtttatataagtagaaatccatttgatacttttgtgtcat |
15168868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 15165346 - 15165226
Alignment:
| Q |
81 |
ttttgtgtcatattggattttcattaataaaataaggtcaaaacatccatctttaccggtattaagcttggaggaaacttttgaaagtttttgtaatggg |
180 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15165346 |
ttttgtgtcatattggagtttcgttaataaaataaggtcaaaacatccatctttacaaattgtaagcttaaaggaaacttttgaaagtttttgtaatggg |
15165247 |
T |
|
| Q |
181 |
gtaagtctgtttggttcattt |
201 |
Q |
| |
|
|||| || |||||||||||| |
|
|
| T |
15165246 |
gtaactccatttggttcattt |
15165226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 4506680 - 4506484
Alignment:
| Q |
2 |
ttccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgataattttgtgtcatattggatttt |
101 |
Q |
| |
|
||||||| | |||||| |||||||||||| ||||||| |||||||| ||| |||||||| |||||||||| ||||| | ||||||||| |||| ||| |
|
|
| T |
4506680 |
ttccattcttttcactagccaagtcaattaaagagtccaattgtaaaataatttatatatgtagaaatccttttgacacttttgtgtctgcttggtttta |
4506581 |
T |
|
| Q |
102 |
cattaataaaataaggtcaaaacatccatctttaccggtattaagcttggaggaaacttttgaaagtttttgtaatggggtaagtctgtttggttcattt |
201 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||| | || |||| ||||||||||| |||| ||||| |||||| |||||||||||| |
|
|
| T |
4506580 |
tgctaataaaataaggtcaa---atcaatctttaccaactttaagcatagatgaaatttttgaaagttattgtgatgggataagtccatttggttcattt |
4506484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 15066792 - 15066876
Alignment:
| Q |
20 |
ccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgataattttgtgtcatattggattttcat |
104 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||||||| ||||||| |||||||||| ||||| |||||||||| |||||| |
|
|
| T |
15066792 |
ccaagtcaattcaagagtccaattgtaaaataatttatatatgtagaaacccatttgatacatttgtatcatattggactttcat |
15066876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 15214648 - 15214555
Alignment:
| Q |
20 |
ccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgataattttgtgtcatattggattttcattaataaaat |
113 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||| |||||||| ||||||| |||||||||| ||||| ||||||||||||||||| || ||||| |
|
|
| T |
15214648 |
ccaagtcagttaaagagtccaattgtaaaataatttatatatgtagaaacccatttgatacatttgtatcatattggattttcatcaacaaaat |
15214555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 1618291 - 1618179
Alignment:
| Q |
1 |
attccattttcttcacttgccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgataattttgtgtcatattggattt |
100 |
Q |
| |
|
||||| ||| |||| || |||||||||||| |||| || |||||||||||| |||| ||| ||||||| |||||||| | ||||||||| ||||||| || |
|
|
| T |
1618291 |
attccttttacttctctagccaagtcaattaaagaatccaattgtaagataatttacatatgtagaaacccatttgacacttttgtgtcttattggaatt |
1618192 |
T |
|
| Q |
101 |
tcattaataaaat |
113 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
1618191 |
tcatgaacaaaat |
1618179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 1626838 - 1626744
Alignment:
| Q |
19 |
gccaagtcaattcaagagtctaattgtaagatagtttatataagtagaaatccatttgataattttgtgtcatattggattttcattaataaaat |
113 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||| |||| ||| |||| || |||||||| | ||||||||| ||||||| |||||| || ||||| |
|
|
| T |
1626838 |
gccaagtctattaaagagtccaattgtaagataatttacatatgtaggaacccatttgacacttttgtgtcttattggaatttcatgaacaaaat |
1626744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University