View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_high_1 (Length: 881)
Name: NF6998_high_1
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 668; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 15 - 866
Target Start/End: Original strand, 10676721 - 10677568
Alignment:
| Q |
15 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctggtatcaacatcaagaccaaagaaatcaatgagagg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10676721 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgctgtgatctggtagcaacatcaagaccaaagaaatcaatgagagg |
10676820 |
T |
|
| Q |
115 |
gaaccaaagacttccataagagtatttttagttctaaagggtatagaaaatttaagcccaacccaaagggtaaagtaataggcaagatagctagtaatgg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
10676821 |
gaaccaaagacttccataagagtatttttagttctaaagggtatagaaaatttaagcccaacccaaagggtcaagtaataggcaagatagctagcaatgg |
10676920 |
T |
|
| Q |
215 |
atagaaaggatgtcttaggatgaatctgaaatggagcccgactttgagggttccttaattggaggaaaccaaggagaacataaaaggaaaaagcaactag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10676921 |
atagaaaggatgtcttaggatgaatctgaaatggagccggactttgagggttccttaattggaggaaaccaaggagaacataaaaggaaaaagcaactag |
10677020 |
T |
|
| Q |
315 |
gttgtgcaaatcagaattgttttcctttgttcttgagagaagatcaagattgttatcttctttctttcttgctatttggacgttacttaatactatataa |
414 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10677021 |
gttgtgcaaatcagaattgttttcttttgttcttgagagaagatcaagattgttatcttctttctttcttgctatttggacgttacttaatactatataa |
10677120 |
T |
|
| Q |
415 |
ttgaaaacaacttgagtaggtaatgatctcctcaaatggggtcttcctctactcacataaacatccatgttataagaggnnnnnnnngtgacaagaaaaa |
514 |
Q |
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| T |
10677121 |
ttgaaaacaacttgagtaggtaatgatctcctcaaatggggtcttcctctactcacataaacatccatgttataagaggttttttttgtgacaagaaaaa |
10677220 |
T |
|
| Q |
515 |
gagatcgaatttaatgaccttggctaggtattatatatacaagctgatgatacacacgaattagggtttgctacaatcactaaactcatcnnnnnnnnnn |
614 |
Q |
| |
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| T |
10677221 |
gagatcgaatttaatgaccttggctaggtattatatatacaagc---tgatacacacgaattagggtttgctacaatcactaaactcatcttttcttttt |
10677317 |
T |
|
| Q |
615 |
nnnnnnnnnnnnnatggaaagcacctgacaaatatttcttttgaaatagtgaccaaatctaaggagataagggaccacatcaaaggtttctgatgcaact |
714 |
Q |
| |
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| T |
10677318 |
ttcttctttttttatggaaagcacctgacaaatatttcttttgaaatagtgaccaaatctaaggagataagggaccacatcaaaggtttctgatgcaact |
10677417 |
T |
|
| Q |
715 |
gtgaccgtaaacatgatattaccacctccttttgttacctttcnnnnnnnnnnnnnnnctatcataaaacatggtatatccgacaatcattagtgaccaa |
814 |
Q |
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| T |
10677418 |
gtgaccgtaaacatgatattaccacctccttttgttacctttcttttcttcttttttt-tatcataaaacatggtatatccgacaatcattagtgaccaa |
10677516 |
T |
|
| Q |
815 |
ctctaaggagagaagggaccacatcaaaggtttcgaatgcaagcgtgattat |
866 |
Q |
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| T |
10677517 |
ctctaaggagagaagggaccacatcaaaggtttcgaatgcaagcgtgattat |
10677568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 372 - 482
Target Start/End: Original strand, 10673863 - 10673973
Alignment:
| Q |
372 |
ttctttctttcttgctatttggacgttacttaatactatataattgaaaacaacttgagtaggtaatgatctcctcaaatggggtcttcctctactcaca |
471 |
Q |
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||||| |||||| | |||||||||||||||||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
10673863 |
ttcttgctttctagttatttggacgttacttaatactatatgattgaaaacaatttgagtatgtaacgatctcctcaaatggggtcttcctctactcaca |
10673962 |
T |
|
| Q |
472 |
taaacatccat |
482 |
Q |
| |
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| T |
10673963 |
tcaacatccat |
10673973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 10673640 - 10673738
Alignment:
| Q |
15 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctg---gtatcaacatcaagaccaaagaaatcaatga |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || ||| ||||||||||||||||||||||||||| |
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| T |
10673640 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccataattattgtgatatggtagtagcaacatcaagaccaaagaaatcaatga |
10673738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 10602398 - 10602517
Alignment:
| Q |
15 |
atgaataaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctggtatcaacatcaagaccaaagaaatcaatgagagg |
114 |
Q |
| |
|
||||||||| ||| ||| ||| |||| ||| |||| ||||||||||||||| || |||| ||||| |||||| || ||||||||||||||||| || |
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| T |
10602398 |
atgaataagaaaccatattgtatatgtaatgcatttcaatgattctccccaagtg---tgatttggtagcaacattaacaccaaagaaatcaatgaaagt |
10602494 |
T |
|
| Q |
115 |
gaaccaaagacttccataagagt |
137 |
Q |
| |
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|||||||| | |||||||||||| |
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| T |
10602495 |
gaaccaaaaatttccataagagt |
10602517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 214 - 337
Target Start/End: Original strand, 10673737 - 10673860
Alignment:
| Q |
214 |
gatagaaaggatgtcttaggatgaatctgaaatggagcccgactttgagggttccttaattggaggaaaccaaggagaacataaaaggaaaaagcaacta |
313 |
Q |
| |
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|||| |||||| ||||||||||||| ||||||||||| | ||| |||| || ||||||||||||||||| ||||||||| || || |||| ||| | |
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| T |
10673737 |
gatataaaggacgtcttaggatgaacctgaaatggagtggggttttaagggctcattaattggaggaaaccagggagaacatgaatggcaaaactaacaa |
10673836 |
T |
|
| Q |
314 |
ggttgtgcaaatcagaattgtttt |
337 |
Q |
| |
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|| ||||||||||| |||||||| |
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| T |
10673837 |
gggtgtgcaaatcaagattgtttt |
10673860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 10613294 - 10613411
Alignment:
| Q |
20 |
taaggaacaataatgtgtatgcaatatattttaatgattctccccaattgcagtgatctggtatcaacatcaagaccaaagaaatcaatgagagggaacc |
119 |
Q |
| |
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|||| ||| ||| |||||||||||||||||| |||| ||| ||||||| ||||| ||||| |||||| | ||||| ||||| ||||| || || || |
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| T |
10613294 |
taagcaaccatattgtgtatgcaatatatttcaatggttccccccaataagtgtgatttggtaacaacattaggaccatggaaataaatgaaagcgaccc |
10613393 |
T |
|
| Q |
120 |
aaagacttccataagagt |
137 |
Q |
| |
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||||||||| | |||||| |
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|
| T |
10613394 |
aaagacttctaaaagagt |
10613411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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