View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_high_10 (Length: 243)
Name: NF6998_high_10
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 23438004 - 23438122
Alignment:
| Q |
97 |
tatgttctgataccatattagaaaggtaaaaatattctcattgagaaaattacttgagaagaaattatagatggtggtaaaaattaactctgtaatacaa |
196 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| |
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| T |
23438004 |
tatgttctaataccatattagaaatgtaaaaatattctcattgagaaaattacttgagaagaaattacagatggtggtcaaaattaactatgtaatacaa |
23438103 |
T |
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| Q |
197 |
ctattaatggtttaattaa |
215 |
Q |
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||||||||||| ||||||| |
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| T |
23438104 |
ctattaatggtctaattaa |
23438122 |
T |
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Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 23430161 - 23430270
Alignment:
| Q |
97 |
tatgttctgataccatattagaaaggtaaaaatattctcattgagaaaattacttgagaagaaattatagatggtggtaaaaattaactctgtaatacaa |
196 |
Q |
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|||||||| |||||||||| |||| |||||| ||||||| ||| ||||||| ||||||||||||||| ||| ||||| |||||||||||||||||| || |
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| T |
23430161 |
tatgttctaataccatatttgaaatgtaaaagtattctctttgggaaaattgcttgagaagaaattacagagagtggtcaaaattaactctgtaataaaa |
23430260 |
T |
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| Q |
197 |
ctattaatgg |
206 |
Q |
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|||||||||| |
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| T |
23430261 |
ctattaatgg |
23430270 |
T |
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