View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_high_11 (Length: 238)
Name: NF6998_high_11
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 18320898 - 18320745
Alignment:
| Q |
69 |
tgcatctgcatgagttaattattaaccaacagaaagggtcatcaaaaataaactcaagatctagaatcaaaaaacattaaaatccacgagccaagtaaag |
168 |
Q |
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| T |
18320898 |
tgcatctgcatgagttaattattaaccaacagaaagggtcatcaaaaataaactcaagatctagaatcaaaaaacattaaaatccacgagccaagtaaag |
18320799 |
T |
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| Q |
169 |
aacttgatctagaacttgaaagggttgaagtttttggaccacccccaaacatat |
222 |
Q |
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| T |
18320798 |
aacttgatctagaacttgaaagggttgaagtttttggaccacccccaaacatat |
18320745 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4276494 - 4276534
Alignment:
| Q |
1 |
aatgatcactttttgacgattaaacataacgttttgacacct |
42 |
Q |
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| T |
4276494 |
aatgatca-tttgtgacgattaaacataacgttttgacacct |
4276534 |
T |
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