View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_high_14 (Length: 228)
Name: NF6998_high_14
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 51881393 - 51881611
Alignment:
| Q |
6 |
aaatggaataataatcaagtcacatatgtggtaatgaaatattaatagtat-atccctcttttgattagctgctaaaagaacatgtaaaagtaaatcatg |
104 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51881393 |
aaatggaataataatcaagtcacatatgtggtcatgaaatattaatagtataatccctcttttgattagctgctaaaagaacatgt-aaagtaaatcatg |
51881491 |
T |
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| Q |
105 |
tgaaactagtagttttattgagnnnnnnnngtgcaaaagtggtgcattctaagtgtgtacttaagctaaaggaaaatatttatataatgatgacactcaa |
204 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51881492 |
tgaaactagtagttttattgag---tttttgtgcaaaagtggtgcattctaagtgtgtacttaagctaaaggaaaatatttatataatgatgacactcaa |
51881588 |
T |
|
| Q |
205 |
ctgaacatggtcaaaagaatcat |
227 |
Q |
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||||||||||||||||||||||| |
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| T |
51881589 |
ctgaacatggtcaaaagaatcat |
51881611 |
T |
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