View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6998_high_16 (Length: 220)

Name: NF6998_high_16
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6998_high_16
NF6998_high_16
[»] chr3 (39 HSPs)
chr3 (1-220)||(8203047-8203265)
chr3 (1-140)||(9552624-9552762)
chr3 (1-128)||(41000654-41000780)
chr3 (1-128)||(41009436-41009562)
chr3 (1-129)||(6196780-6196905)
chr3 (1-105)||(8608549-8608652)
chr3 (1-129)||(12557422-12557547)
chr3 (1-128)||(3242931-3243055)
chr3 (11-128)||(10720317-10720436)
chr3 (1-129)||(15622824-15622948)
chr3 (1-129)||(33568232-33568357)
chr3 (1-114)||(14420666-14420778)
chr3 (47-128)||(17928234-17928315)
chr3 (11-128)||(25265916-25266035)
chr3 (1-114)||(23285735-23285845)
chr3 (1-129)||(70515-70639)
chr3 (1-109)||(11183813-11183918)
chr3 (1-129)||(13109369-13109494)
chr3 (10-129)||(30093436-30093554)
chr3 (11-129)||(12477112-12477227)
chr3 (10-109)||(14885416-14885512)
chr3 (26-114)||(15534840-15534925)
chr3 (26-129)||(8618852-8618952)
chr3 (3-126)||(27881403-27881527)
chr3 (185-220)||(10720222-10720257)
chr3 (185-220)||(15622997-15623032)
chr3 (1-75)||(15682786-15682860)
chr3 (10-94)||(21610165-21610249)
chr3 (185-220)||(25266081-25266116)
chr3 (185-220)||(41000832-41000867)
chr3 (185-220)||(41009614-41009649)
chr3 (26-129)||(46398263-46398363)
chr3 (186-220)||(17928360-17928394)
chr3 (185-220)||(70685-70720)
chr3 (185-220)||(12477029-12477064)
chr3 (185-220)||(14885312-14885347)
chr3 (185-220)||(20438486-20438521)
chr3 (185-220)||(41435651-41435686)
chr3 (185-219)||(23285636-23285670)
[»] chr2 (16 HSPs)
chr2 (1-164)||(42572083-42572245)
chr2 (1-164)||(30691456-30691619)
chr2 (1-153)||(25494212-25494364)
chr2 (9-128)||(35140992-35141109)
chr2 (1-164)||(15950598-15950754)
chr2 (11-128)||(3764053-3764172)
chr2 (11-128)||(16275807-16275926)
chr2 (1-128)||(21112379-21112505)
chr2 (53-140)||(24287996-24288084)
chr2 (185-220)||(3763954-3763989)
chr2 (185-220)||(16275986-16276021)
chr2 (1-122)||(21857703-21857818)
chr2 (185-220)||(35141160-35141195)
chr2 (185-220)||(24288124-24288159)
chr2 (185-220)||(24692663-24692698)
chr2 (179-215)||(21113793-21113829)
[»] chr6 (25 HSPs)
chr6 (1-164)||(28270223-28270386)
chr6 (1-164)||(28305192-28305355)
chr6 (1-164)||(28348973-28349136)
chr6 (1-140)||(25504077-25504215)
chr6 (1-129)||(22326260-22326385)
chr6 (1-129)||(27071848-27071974)
chr6 (10-129)||(20457019-20457137)
chr6 (11-128)||(27056407-27056526)
chr6 (1-129)||(620911-621036)
chr6 (11-128)||(16636528-16636647)
chr6 (1-108)||(22776800-22776904)
chr6 (1-129)||(19716033-19716159)
chr6 (1-129)||(27512334-27512457)
chr6 (185-220)||(16636695-16636730)
chr6 (26-129)||(16822778-16822878)
chr6 (185-220)||(25503999-25504034)
chr6 (185-220)||(27056290-27056325)
chr6 (82-164)||(16582079-16582161)
chr6 (82-164)||(16613219-16613301)
chr6 (26-106)||(20045665-20045742)
chr6 (185-219)||(18946927-18946961)
chr6 (1-78)||(20055925-20056000)
chr6 (186-220)||(20456934-20456968)
chr6 (185-219)||(27071761-27071795)
chr6 (186-220)||(27512506-27512540)
[»] chr7 (26 HSPs)
chr7 (10-139)||(12586756-12586885)
chr7 (10-139)||(4829938-4830066)
chr7 (11-128)||(27436380-27436496)
chr7 (10-126)||(4949791-4949906)
chr7 (15-163)||(29024524-29024670)
chr7 (11-128)||(5207212-5207331)
chr7 (11-128)||(27974327-27974446)
chr7 (41-128)||(567284-567372)
chr7 (1-129)||(8812828-8812953)
chr7 (1-129)||(13268328-13268453)
chr7 (1-147)||(840537-840680)
chr7 (1-147)||(847713-847856)
chr7 (1-147)||(1205717-1205860)
chr7 (1-140)||(13833857-13833990)
chr7 (1-97)||(16270381-16270475)
chr7 (10-129)||(34136689-34136807)
chr7 (1-140)||(1959563-1959692)
chr7 (185-220)||(567191-567226)
chr7 (185-220)||(5207113-5207148)
chr7 (185-220)||(13834035-13834070)
chr7 (10-94)||(23884568-23884652)
chr7 (185-220)||(27974232-27974267)
chr7 (185-220)||(803203-803238)
chr7 (185-220)||(4949701-4949736)
chr7 (185-220)||(16292070-16292105)
chr7 (180-219)||(34136608-34136647)
[»] scaffold0044 (2 HSPs)
scaffold0044 (1-130)||(74210-74337)
scaffold0044 (179-220)||(74120-74162)
[»] chr5 (33 HSPs)
chr5 (1-164)||(20378863-20379025)
chr5 (9-164)||(23638462-23638615)
chr5 (9-164)||(23834274-23834427)
chr5 (1-128)||(24962877-24963003)
chr5 (1-164)||(28846305-28846460)
chr5 (11-128)||(12178682-12178801)
chr5 (11-128)||(33842946-33843065)
chr5 (1-114)||(20097250-20097360)
chr5 (11-128)||(11811535-11811654)
chr5 (11-128)||(26087451-26087570)
chr5 (1-114)||(25528565-25528674)
chr5 (1-129)||(22956723-22956848)
chr5 (1-109)||(29895469-29895574)
chr5 (1-129)||(36450621-36450746)
chr5 (26-129)||(21690966-21691067)
chr5 (26-129)||(7789218-7789318)
chr5 (26-129)||(12393202-12393302)
chr5 (89-217)||(21865945-21866072)
chr5 (10-147)||(26871420-26871555)
chr5 (26-129)||(1800523-1800623)
chr5 (185-220)||(7259634-7259669)
chr5 (185-220)||(11811423-11811458)
chr5 (1-122)||(21993951-21994066)
chr5 (185-220)||(24962791-24962826)
chr5 (185-220)||(26087346-26087381)
chr5 (185-220)||(27231651-27231686)
chr5 (185-220)||(33842847-33842882)
chr5 (185-220)||(29895642-29895677)
chr5 (185-220)||(34464034-34464069)
chr5 (186-220)||(21691131-21691165)
chr5 (186-219)||(20097162-20097195)
chr5 (179-220)||(20667293-20667334)
chr5 (185-220)||(12178578-12178614)
[»] chr1 (17 HSPs)
chr1 (1-128)||(31542314-31542440)
chr1 (41-127)||(13471129-13471216)
chr1 (10-130)||(1958206-1958325)
chr1 (1-220)||(2387527-2387738)
chr1 (10-129)||(2341268-2341386)
chr1 (1-129)||(6202744-6202869)
chr1 (1-114)||(14817873-14817979)
chr1 (1-129)||(35071948-35072073)
chr1 (11-129)||(22430305-22430420)
chr1 (185-220)||(6202660-6202695)
chr1 (185-220)||(13471270-13471305)
chr1 (185-220)||(31542492-31542527)
chr1 (1-75)||(31554518-31554592)
chr1 (185-220)||(35072121-35072156)
chr1 (185-220)||(14817772-14817807)
chr1 (1-96)||(19371170-19371262)
chr1 (185-220)||(19371339-19371374)
[»] chr4 (24 HSPs)
chr4 (1-139)||(3359601-3359738)
chr4 (1-164)||(8100633-8100788)
chr4 (1-129)||(20556284-20556409)
chr4 (1-129)||(15077297-15077423)
chr4 (1-129)||(15079603-15079729)
chr4 (1-114)||(15900529-15900639)
chr4 (27-129)||(22706380-22706480)
chr4 (1-75)||(26218314-26218387)
chr4 (1-114)||(14883914-14884023)
chr4 (1-129)||(3386123-3386248)
chr4 (1-129)||(18038648-18038771)
chr4 (1-129)||(9187209-9187337)
chr4 (64-140)||(21529240-21529317)
chr4 (185-220)||(14919900-14919935)
chr4 (11-114)||(3841683-3841788)
chr4 (186-220)||(16725696-16725730)
chr4 (39-129)||(18386038-18386126)
chr4 (187-220)||(21529156-21529189)
chr4 (185-220)||(3386039-3386074)
chr4 (180-219)||(20556453-20556492)
chr4 (186-220)||(3841584-3841618)
chr4 (185-219)||(9187386-9187420)
chr4 (186-220)||(18038820-18038854)
chr4 (186-220)||(22706531-22706565)
[»] scaffold0582 (1 HSPs)
scaffold0582 (10-139)||(4904-5032)
[»] scaffold0389 (2 HSPs)
scaffold0389 (11-128)||(2089-2205)
scaffold0389 (185-220)||(2255-2290)
[»] chr8 (13 HSPs)
chr8 (1-163)||(17680490-17680644)
chr8 (10-114)||(20736106-20736210)
chr8 (10-114)||(20744664-20744768)
chr8 (1-164)||(39843144-39843299)
chr8 (10-114)||(20741148-20741252)
chr8 (1-129)||(22160705-22160830)
chr8 (1-128)||(24709092-24709217)
chr8 (10-140)||(6666111-6666238)
chr8 (1-109)||(25856871-25856976)
chr8 (10-129)||(32002144-32002261)
chr8 (186-220)||(6666284-6666318)
chr8 (185-220)||(32002309-32002344)
chr8 (185-219)||(25856769-25856803)
[»] scaffold0393 (1 HSPs)
scaffold0393 (1-129)||(3858-3984)
[»] scaffold0357 (2 HSPs)
scaffold0357 (10-114)||(8701-8805)
scaffold0357 (185-220)||(8871-8906)
[»] scaffold0320 (2 HSPs)
scaffold0320 (10-114)||(3946-4049)
scaffold0320 (185-219)||(3849-3883)
[»] scaffold0306 (1 HSPs)
scaffold0306 (1-129)||(18013-18138)
[»] scaffold0004 (1 HSPs)
scaffold0004 (10-114)||(192296-192398)
[»] scaffold2162 (2 HSPs)
scaffold2162 (11-128)||(253-372)
scaffold2162 (185-220)||(454-489)
[»] scaffold0600 (1 HSPs)
scaffold0600 (10-129)||(8363-8481)
[»] scaffold0551 (3 HSPs)
scaffold0551 (10-129)||(5023-5141)
scaffold0551 (185-220)||(4938-4973)
scaffold0551 (185-220)||(11052-11087)
[»] scaffold0132 (2 HSPs)
scaffold0132 (1-129)||(31245-31371)
scaffold0132 (185-220)||(31419-31454)
[»] scaffold0104 (2 HSPs)
scaffold0104 (1-131)||(37167-37295)
scaffold0104 (185-220)||(37085-37120)
[»] scaffold0068 (2 HSPs)
scaffold0068 (26-129)||(22843-22944)
scaffold0068 (186-220)||(22745-22779)
[»] scaffold0019 (1 HSPs)
scaffold0019 (10-109)||(19391-19488)
[»] scaffold0001 (1 HSPs)
scaffold0001 (10-109)||(98995-99092)
[»] scaffold0202 (1 HSPs)
scaffold0202 (1-114)||(25379-25490)
[»] scaffold0364 (1 HSPs)
scaffold0364 (1-129)||(80-206)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-114)||(301326-301436)
[»] scaffold0327 (1 HSPs)
scaffold0327 (1-129)||(17411-17536)
[»] scaffold0084 (1 HSPs)
scaffold0084 (10-94)||(33905-33988)
[»] scaffold0243 (2 HSPs)
scaffold0243 (10-114)||(16909-17012)
scaffold0243 (186-220)||(17062-17096)
[»] scaffold0138 (1 HSPs)
scaffold0138 (1-106)||(10524-10626)
[»] scaffold0125 (2 HSPs)
scaffold0125 (78-139)||(11638-11699)
scaffold0125 (186-220)||(11740-11774)
[»] scaffold0478 (2 HSPs)
scaffold0478 (10-105)||(115-209)
scaffold0478 (185-220)||(6-41)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-128)||(12335-12457)
[»] scaffold0183 (1 HSPs)
scaffold0183 (10-82)||(30815-30886)
[»] scaffold0023 (2 HSPs)
scaffold0023 (10-140)||(144395-144520)
scaffold0023 (185-220)||(144321-144356)
[»] scaffold0435 (1 HSPs)
scaffold0435 (185-220)||(14280-14315)
[»] scaffold0114 (1 HSPs)
scaffold0114 (10-109)||(31640-31740)
[»] scaffold0782 (1 HSPs)
scaffold0782 (185-220)||(5903-5938)
[»] scaffold0605 (1 HSPs)
scaffold0605 (185-220)||(6762-6797)
[»] scaffold0014 (1 HSPs)
scaffold0014 (185-220)||(184177-184212)
[»] scaffold0441 (1 HSPs)
scaffold0441 (186-220)||(9585-9619)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-78)||(20598-20673)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8203265 - 8203047
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  8203265 acaacttcaaaaaatcttaactaagctttagcttttgattaagaactttttccttggtttcattcttaccttttgaaaaaagaacctattgcaatatctt 8203166  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttcgatnnnnnnnnnnnttgtacatttttgcataagcat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||           ||||||||||||||||||||||    
T  8203165 tacaattttaaaatgaatccatgttcctttaaaatgtttataaattaagtttggtaaatccttcgat-aaaaaaaaaattgtacatttttgcataagcat 8203067  T
Q  201 atcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||    
T  8203066 atcatgcatcattttgcatt 8203047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 9552762 - 9552624
Alignment:
Q  1 acaacttcaaaaa-atcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||   ||||| |||||||||||| |||||||||||||||||    
T  9552762 acaacttcaaaaatatcttaactaagctttagcttttg-ttaagaactttttccttggtttagttcttaacttttgaaaaag-aacctattgcaatatct 9552665  T
Q  100 ttacaattttaaaatgaatccatgttcctttaaaatgttta 140  Q
    |||||||||| ||||||| | |||||||| || ||||||||    
T  9552664 ttacaattttcaaatgaaactatgttcctctacaatgttta 9552624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41000654 - 41000780
Alignment:
Q  1 acaacttca-aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||| ||||||||||||||| | |||||||||| ||||||| |||||||||||||||  ||||| |||||||||||| |||||||| ||||||||    
T  41000654 acaacttcataaaaatcttaactaagccttagcttttg-ttaagaagtttttccttggtttcgttcttaacttttgaaaaag-aacctattccaatatct 41000751  T
Q  100 ttacaattttaaaatgaatccatgttcct 128  Q
    |||||||||| ||||||| | ||||||||    
T  41000752 ttacaattttcaaatgaaactatgttcct 41000780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41009436 - 41009562
Alignment:
Q  1 acaacttca-aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||| ||||||||||||||| | |||||||||| ||||||| |||||||||||||||  ||||| |||||||||||| |||||||| ||||||||    
T  41009436 acaacttcataaaaatcttaactaagccttagcttttg-ttaagaagtttttccttggtttcgttcttaacttttgaaaaag-aacctattccaatatct 41009533  T
Q  100 ttacaattttaaaatgaatccatgttcct 128  Q
    |||||||||| ||||||| | ||||||||    
T  41009534 ttacaattttcaaatgaaactatgttcct 41009562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 6196780 - 6196905
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  6196780 acaacttcaaaa-atcttaactaagctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 6196876  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  6196877 cacaattttcaaataaaacaatgttcctt 6196905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 8608549 - 8608652
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||| |||||||||| |||||| ||||||| ||||    
T  8608549 acaacttcaaaaaatcttaactaagctttagcttttg-ttaagaacttttatccttggtttcattctta-cttttgaaaagggaaccaattgcaacatct 8608646  T
Q  100 ttacaa 105  Q
    | ||||    
T  8608647 tcacaa 8608652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 12557422 - 12557547
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||||||||||||| |||||  |||||| ||||||||| |||||| |||||||||||||    
T  12557422 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaactttttccttagtttcgttcttac-ttttgaaaagggaaccaattgcaatatctt 12557518  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  12557519 cacaattttcaaattaaacaatgttcctt 12557547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 3243055 - 3242931
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| |||| ||||||| |||||||||| |||||||| |||  |||| | ||||||||| |||||| |||||||||||||    
T  3243055 acaacttcaaaaa-tcttaactaagcttttgcttttg-ttaagaacttcttccttggcttctttcttgc-ttttgaaaatggaaccgattgcaatatctt 3242959  T
Q  101 tacaattttaaaatgaatccatgttcct 128  Q
    ||||||||| |||| || ||||||||||    
T  3242958 tacaattttcaaataaaaccatgttcct 3242931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 10720436 - 10720317
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||||||||||| |||||||||  |||||||| |||||||    
T  10720436 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattt 10720337  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  10720336 tcaaatgaaaccatgttcct 10720317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 15622824 - 15622948
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||| ||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  15622824 acaacttcaaaa-atcttaactaagctttagcttttg-ttaagaac-ttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 15622919  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  15622920 cacaattttcaaataaaacaatgttcctt 15622948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 33568232 - 33568357
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||| |||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  33568232 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 33568328  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  33568329 cacaattttcaaataaaacaatgttcctt 33568357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14420666 - 14420778
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||| |||||||||||  |||||| ||||||||| |||||| || |||| ||||    
T  14420666 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaacttttttccttggtttcgttcttactttttgaaaagggaaccaatagcaacatct 14420763  T
Q  100 ttacaattttaaaat 114  Q
    | |||||||| ||||    
T  14420764 tcacaattttcaaat 14420778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 128
Target Start/End: Original strand, 17928234 - 17928315
Alignment:
Q  47 tttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgttcct 128  Q
    |||||||||||||||  ||||||||| |||||| | ||| ||||||||||||||||||||||| ||||||| ||||||||||    
T  17928234 tttttccttggtttcgttcttaccttgtgaaaaggaaacatattgcaatatctttacaattttcaaatgaaaccatgttcct 17928315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 25265916 - 25266035
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    ||||| |||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||||||||||| |||||||||  |||||||| |||||||    
T  25265916 aaaattttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattt 25266015  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| |||| |||||    
T  25266016 tcaaatgaaaccatattcct 25266035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 23285845 - 23285735
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  |||||||||  ||||||||||| | ||||| |||||||||||||||| ||||| |||||||||| |||||| ||||||| |||||    
T  23285845 acaacttcaaaaac-cttaactaagttttagcttttg-taaagaattttttccttggtttcattctta-cttttgaaaagggaaccaattgcaacatctt 23285749  T
Q  101 tacaattttaaaat 114  Q
     |||||||| ||||    
T  23285748 cacaattttcaaat 23285735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 70515 - 70639
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| |||||||| || |||||||||||| |||||||| ||||||||||||||  ||||| |||||||||| |||||| ||||||| || ||    
T  70515 acaacttcaaaa-atcttaaccaagctttagcttttg-ttaagaac-ttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatttt 70610  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  70611 cacaattttcaaataaaacaatgttcctt 70639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 11183813 - 11183918
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||  ||||| |||||||| | | ||||  |||||||| |||    
T  11183813 acaacttcaaaa-atcttaactaagctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttgaagaggtaaccatttgcaatacctt 11183909  T
Q  101 tacaatttt 109  Q
    || ||||||    
T  11183910 tataatttt 11183918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 13109494 - 13109369
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||| ||||||||||||||  || ||  |||||||||| |||||| ||||||| |||||    
T  13109494 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaattttttccttggttt-tgtttttacttttgaaaagggaaccaattgcaacatctt 13109398  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  13109397 cacaattttcaaataaaacaatgttcctt 13109369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 30093554 - 30093436
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| |||||||||||  |||||||||||| |||||||||||  ||||| |||||||||| |||||| ||||||| ||||| |||||||    
T  30093554 aaaaatcttaactaagctttagctttt-cttaagaacttttatccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatcttcacaattt 30093457  T
Q  109 taaaatgaatccatgttcctt 129  Q
     || || || | |||||||||    
T  30093456 aaagataaaacaatgttcctt 30093436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 12477227 - 12477112
Alignment:
Q  11 aaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttta 110  Q
    |||||||||||||| ||||||||||   |||||||||||||||||||| ||  ||||| |||||||||| |||||| ||||||  ||||| ||||||||     
T  12477227 aaaatcttaactaagctttagcttt--cttaagaactttttccttggtctcgttctta-cttttgaaaagggaaccaattgcagcatcttcacaattttc 12477131  T
Q  111 aaatgaatccatgttcctt 129  Q
    |||| || | |||||||||    
T  12477130 aaataaaacaatgttcctt 12477112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 14885512 - 14885416
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 109  Q
    |||||||||||||||  |||| |||||| |||||||||||||||||||||||  |||||| ||||| |||||||||| ||||||| ||||| ||||||||    
T  14885512 aaaaatcttaactaag-tttatcttttg-ttaagaactttttccttggtttcgttcttactttttg-aaaaggaaccaattgcaacatcttcacaatttt 14885416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 15534925 - 15534840
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaat 114  Q
    |||||||||||| |||||||||||||||||||||||  ||||| |||||| ||| |||||| ||||||| |||||||||||||| ||||    
T  15534925 ctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttg-aaagggaaccaattgcaacatctttacaatttttaaat 15534840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 8618852 - 8618952
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgtt 125  Q
    |||||||||||| |||||||||||||||||||||||  ||||| |||||| ||| |||||| |||||||  ||||||||||||| |||| || | |||||    
T  8618852 ctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttg-aaagggaaccaattgcaacgtctttacaatttttaaataaaacaatgtt 8618948  T
Q  126 cctt 129  Q
    ||||    
T  8618949 cctt 8618952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 27881403 - 27881527
Alignment:
Q  3 aacttcaaaaa-atcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatcttt 101  Q
    ||||||||||| ||||| || || |||| ||||||| || ||||||| | | ||||||||| ||||||||||||||||  ||||| || |||||||| ||    
T  27881403 aacttcaaaaacatcttgaccaagcttttgcttttg-ttgagaacttctccattggtttcattcttaccttttgaaaatagaaccgatcgcaatatcctt 27881501  T
Q  102 aca-attttaaaatgaatccatgttc 126  Q
    ||| ||||| ||||||| ||||||||    
T  27881502 acagattttcaaatgaaaccatgttc 27881527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 10720257 - 10720222
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  10720257 atttttgcataagcatatcatgcatcattttgcatt 10720222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 15622997 - 15623032
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  15622997 atttttgcataagcatatcatgcatcattttgcatt 15623032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15682860 - 15682786
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttg 75  Q
    |||||||||||||| ||||||||||  |||| |||||| ||||||||||||||||||||||   ||||||||||||    
T  15682860 acaacttcaaaaaaatcttaactaagttttaacttttg-ttaagaactttttccttggttttgatcttaccttttg 15682786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 21610165 - 21610249
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaac--tttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaa 94  Q
    ||||| ||||||||| |||||||||||| ||||||||  |||||||||||||||  ||||| |||||||||| |||||| |||||||    
T  21610165 aaaaaccttaactaagctttagcttttg-ttaagaactttttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaa 21610249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 25266081 - 25266116
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  25266081 atttttgcataagcatatcatgcatcattttgcatt 25266116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 41000832 - 41000867
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  41000832 atttttgcataagcatatcatgcatcattttgcatt 41000867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 41009614 - 41009649
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  41009614 atttttgcataagcatatcatgcatcattttgcatt 41009649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 46398363 - 46398263
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgtt 125  Q
    |||||||||||| |||||||||||||||||||||||  ||||| |||||| ||| |||||| |||||||  ||||||||| ||| |||| || | |||||    
T  46398363 ctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttg-aaagggaaccaattgcaacgtctttacaacttttaaataaaacaatgtt 46398267  T
Q  126 cctt 129  Q
    ||||    
T  46398266 cctt 46398263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 17928360 - 17928394
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||||||||||    
T  17928360 tttttgcataagcatatcatgcatcattttgcatt 17928394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 70685 - 70720
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  70685 atttttgcataagcatagcatgcatcattttgcatt 70720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 12477064 - 12477029
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  12477064 atttttgcataagcatagcatgcatcattttgcatt 12477029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 14885347 - 14885312
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  14885347 atttttgcataagcatagcatgcatcattttgcatt 14885312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 20438486 - 20438521
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  20438486 atttttgcataagcatatcatgcatcatcttgcatt 20438521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 41435651 - 41435686
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  41435651 atttttgcataagcatatcatgcatcatcttgcatt 41435686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 23285670 - 23285636
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcat 219  Q
    ||||||||||||||||| |||||||||||||||||    
T  23285670 atttttgcataagcatagcatgcatcattttgcat 23285636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 42572245 - 42572083
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  | ||||||||||||||| |||||| ||||||||||||    
T  42572245 acaacttcaaaaaatcttaactaagctttagcttttg-ttaagaactttttccttggtttcgattttaccttttgaaaaaagaaccttttgcaatatctt 42572147  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
     |||||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  42572146 cacaattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 42572083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 30691619 - 30691456
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||| |||||| |||||||||||    
T  30691619 acaacttcaaaaaaatcttaactaaactttagcttttg-ttaagaactttttctttggtttcgatcttaccttttgaaaaaagaaccttttgcaatatct 30691521  T
Q  100 ttacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
    | | |||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  30691520 tcataattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 30691456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 25494212 - 25494364
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||||||||| | |||| |||||||||||    
T  25494212 acaacttcaaaaaaatcttaactaagctttagcttttg-ttaagaactttttccttggtttcgttcttaccttttgaaaaaaggaccttttgcaatatct 25494310  T
Q  100 ttacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttg 153  Q
    | |||||||| ||||||| ||||||| || ||  ||||||| |||| |||||||    
T  25494311 tcacaattttcaaatgaaaccatgtttctctaccatgtttaaaaatcaactttg 25494364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 35140992 - 35141109
Alignment:
Q  9 aaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    |||||||||||||||| | |||||||||| ||||||| |||||||||||||||  ||||| ||||| |||||| ||||||||||||||||||||||||||    
T  35140992 aaaaaatcttaactaagccttagcttttg-ttaagaagtttttccttggtttcgttcttaacttttaaaaaag-aacctattgcaatatctttacaattt 35141089  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| | ||||||||    
T  35141090 tcaaatgaaactatgttcct 35141109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 15950754 - 15950598
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||||| |||||||| ||||||||||||       ||| |||||||| ||||  |||||||||||||||||||||||  ||||||||||||    
T  15950754 acaacttcaaaaaat-ttaactaagctttagcttttgt------actctttccttgatttcgttcttaccttttgaaaaaggaaccgtttgcaatatctt 15950662  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
     |||||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  15950661 cacaattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 15950598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 3764172 - 3764053
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||||||||||| |||||||||  |||||||| |||||||    
T  3764172 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattt 3764073  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  3764072 tcaaatgaaaccatgttcct 3764053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 16275807 - 16275926
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||||||||||| |||||||||  |||||||| |||||||    
T  16275807 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattt 16275906  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  16275907 tcaaatgaaaccatgttcct 16275926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 21112379 - 21112505
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| |||| |||||  ||||||||||||||||||||||||  |||||||| |||||||||||| |  |||| | |||||    
T  21112379 acaacttcaaaaa-tcttaactaagctttcgctttc-attaagaactttttccttggtttcgttcttacctgttgaaaaaggaatcgtttgcgacatctt 21112476  T
Q  101 tacaatttt-aaaatgaatccatgttcct 128  Q
    ||||||||| ||||| || ||||||||||    
T  21112477 tacaattttcaaaataaaaccatgttcct 21112505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 24287996 - 24288084
Alignment:
Q  53 cttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaat-tttaaaatgaatccatgttcctttaaaatgttta 140  Q
    |||||||||  |||||||||||||||||||||||  ||||||  |||||||||| || |||||||| |||||||||| || ||||||||    
T  24287996 cttggtttcgttcttaccttttgaaaaaggaaccgtttgcaacgtctttacaatgttcaaaatgaaaccatgttcctctataatgttta 24288084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 3763989 - 3763954
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  3763989 atttttgcataagcatatcatgcatcattttgcatt 3763954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 16275986 - 16276021
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  16275986 atttttgcataagcatatcatgcatcattttgcatt 16276021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21857818 - 21857703
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||| | ||||||||||||       |||||||||||||||||  |||||||||||||||||||||||  |||| |  ||||    
T  21857818 acaacttcaaaaa-tcttaactgagctttagcttttgt------actttttccttggtttcgttcttaccttttgaaaaaggaaccgtttgcgacgtctt 21857726  T
Q  101 tacaat-tttaaaatgaatccat 122  Q
    |||||| || |||||||| ||||    
T  21857725 tacaatattcaaaatgaaaccat 21857703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 35141160 - 35141195
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  35141160 atttttgcataagcatatcatgcatcattttgcatt 35141195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 24288124 - 24288159
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||| ||||||||||||||||||||    
T  24288124 atttttgcataagcacatcatgcatcattttgcatt 24288159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 24692663 - 24692698
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24692663 atttttgcataagcatatcgtgcatcattttgcatt 24692698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 21113793 - 21113829
Alignment:
Q  179 ttgtacatttttgcataagcatatcatgcatcatttt 215  Q
    ||||||||||||||||||  |||||||||||||||||    
T  21113793 ttgtacatttttgcataaatatatcatgcatcatttt 21113829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 28270223 - 28270386
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||| |||||| |||||||||||    
T  28270223 acaacttcaaaaaaatcttaactaaactttagcttttg-ttaagaactttttctttggtttcgatcttaccttttgaaaaaagaaccttttgcaatatct 28270321  T
Q  100 ttacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
    | | |||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  28270322 tcataattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 28270386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 28305192 - 28305355
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||| |||||| |||||||||||    
T  28305192 acaacttcaaaaaaatcttaactaaactttagcttttg-ttaagaactttttctttggtttcgatcttaccttttgaaaaaagaaccttttgcaatatct 28305290  T
Q  100 ttacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
    | | |||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  28305291 tcataattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 28305355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 28348973 - 28349136
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||||| |||||| |||||||||||    
T  28348973 acaacttcaaaaaaatcttaactaaactttagcttttg-ttaagaactttttctttggtttcgatcttaccttttgaaaaaagaaccttttgcaatatct 28349071  T
Q  100 ttacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
    | | |||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  28349072 tcataattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 28349136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 25504215 - 25504077
Alignment:
Q  1 acaacttcaaaaa-atcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||   ||||| |||||||||||| |||||||||||||||||    
T  25504215 acaacttcaaaaatatcttaactaagctttagcttttg-ttaagaactttttccttggtttagttcttaacttttgaaaaag-aacctattgcaatatct 25504118  T
Q  100 ttacaattttaaaatgaatccatgttcctttaaaatgttta 140  Q
    |||||||||| ||||||| | |||||||| || ||||||||    
T  25504117 ttacaattttcaaatgaaactatgttcctctacaatgttta 25504077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 22326260 - 22326385
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  22326260 acaacttcaaaa-atcttaactaagctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 22326356  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||| ||| |||| || | |||||||||    
T  22326357 cacaaatttcaaataaaacaatgttcctt 22326385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 27071974 - 27071848
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||  |||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  27071974 acaacttcaaaaaaccttaactaagctttagcttttg-ttaagatttttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 27071877  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  27071876 cacaattttcaaataaaacaatgttcctt 27071848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 20457137 - 20457019
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||||||||  ||||| |||||||||| |||||| ||||||| ||||| |||||||    
T  20457137 aaaaatcttaactaagctttagcttttg-ttaagaacttttatccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatcttcacaattt 20457040  T
Q  109 taaaatgaatccatgttcctt 129  Q
    | |||| || | |||||||||    
T  20457039 tcaaataaaacaatgttcctt 20457019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 27056526 - 27056407
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||| ||||||| |||||||||  |||||||| |||||||    
T  27056526 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttacctttggaaaaagaaacctattgtaaatatcttgacaattt 27056427  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  27056426 tcaaatgaaaccatgttcct 27056407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 621036 - 620911
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||| ||||||||| |||||||||||| |||||||||||||  ||||||||  ||||| |||||||||| |||||| |||| || |||||    
T  621036 acaacttcaaaaaa-cttaactaagctttagcttttg-ttaagaactttttttttggtttcgttctta-cttttgaaaagggaaccaattggaacatctt 620940  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  620939 cacaattttcaaataaaacaatgttcctt 620911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 16636528 - 16636647
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||| ||||  |||||||||||||||||| |||||||||  |||||||| |||||||    
T  16636528 aaaatcttaactaagcttttagcttctgttaaagaacttcttccttgatttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattt 16636627  T
Q  109 taaaatgaatccatgttcct 128  Q
    | | ||||| ||||||||||    
T  16636628 tcatatgaaaccatgttcct 16636647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 22776904 - 22776800
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||| |||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  22776904 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 22776808  T
Q  101 tacaattt 108  Q
     |||||||    
T  22776807 cacaattt 22776800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 19716033 - 19716159
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaac-tttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||| ||||||||||| |||||| ||||| |||||||| |||||||||||||||  ||||| |||||||||| |||||| ||| ||| ||||    
T  19716033 acaacttcaaaa-atcttaactaagctttaggttttg-ttaagaacttttttccttggtttcgttctta-cttttgaaaagggaaccaattacaacatct 19716129  T
Q  100 ttacaattttaaaatgaatccatgttcctt 129  Q
    | |||||||| |||| || | |||||||||    
T  19716130 tcacaattttcaaataaaacaatgttcctt 19716159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 27512334 - 27512457
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||  |||||||||||||  ||||| |||||| ||| |||||| ||||||| | |||    
T  27512334 acaacttcaaaa-atcttaactaagctttagcttttg-ttaagaac-ctttccttggtttcgttctta-cttttg-aaagggaaccaattgcaacacctt 27512428  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
    ||||||||| |||| || | |||||||||    
T  27512429 tacaatttttaaataaaacaatgttcctt 27512457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 16636695 - 16636730
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  16636695 atttttgcataagcatatcatgcatcattttgcatt 16636730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 16822878 - 16822778
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgtt 125  Q
    |||||||||||| |||||||||||||||||||||||  ||||| |||||| ||| |||| | |||||||  ||||||||||||| |||| || | |||||    
T  16822878 ctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttg-aaagggaatcaattgcaacgtctttacaatttttaaataaaacaatgtt 16822782  T
Q  126 cctt 129  Q
    ||||    
T  16822781 cctt 16822778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 25504034 - 25503999
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  25504034 atttttgcataagcatatcatgcatcattttgcatt 25503999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 27056325 - 27056290
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  27056325 atttttgcataagcatatcatgcatcattttgcatt 27056290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 164
Target Start/End: Original strand, 16582079 - 16582161
Alignment:
Q  82 gaacctattgcaatatctttacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
    |||||| |||||||||||| | |||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  16582079 gaaccttttgcaatatcttcataattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 16582161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 16613301 - 16613219
Alignment:
Q  82 gaacctattgcaatatctttacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
    |||||| |||||||||||| | |||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  16613301 gaaccttttgcaatatcttcataattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 16613219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 20045742 - 20045665
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaat 106  Q
    |||||||||||| |||||||||||||||||||||||  ||||| |||||| ||| |||||| |||||||  ||||||||||    
T  20045742 ctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttg-aaagggaaccaattgcaacgtctttacaat 20045665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 18946961 - 18946927
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcat 219  Q
    ||||||||||||||||| |||||||||||||||||    
T  18946961 atttttgcataagcatagcatgcatcattttgcat 18946927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20056000 - 20055925
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaac-tttttccttggtttcagtcttaccttttgaaa 78  Q
    ||||||||||||| ||||||||||  ||||||||||| |||||||| |||||||||||||||  ||||| |||||||||    
T  20056000 acaacttcaaaaa-tcttaactaagttttagcttttg-ttaagaacttttttccttggtttcgttctta-cttttgaaa 20055925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 20456968 - 20456934
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||| |||||    
T  20456968 tttttgcataagcatatcatgcatcatttagcatt 20456934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 27071795 - 27071761
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcat 219  Q
    ||||||||||||||||| |||||||||||||||||    
T  27071795 atttttgcataagcatagcatgcatcattttgcat 27071761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 27512506 - 27512540
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||| ||||||||||||||    
T  27512506 tttttgcataagcatatcatacatcattttgcatt 27512540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 12586756 - 12586885
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaa-aggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||||||  |||||||||||||||| |||||||||||||||||||||||||||||    
T  12586756 aaaaatcttaactaagctttagcttttg-ttaagaactttttctttggtttcgttcttaccttttgaaaaaaggaacctattgcaatatctttacaattt 12586854  T
Q  109 taaaatgaatccatgttcctttaaaatgttt 139  Q
    | ||||||| |||||||||| || |||||||    
T  12586855 ttaaatgaaaccatgttcctctataatgttt 12586885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 4830066 - 4829938
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 109  Q
    ||||||||||||||| | ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4830066 aaaaatcttaactaagccttagctttt-attaagaactttttccttggtttcgttcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 4829968  T
Q  110 aaaatgaatccatgttcctttaaaatgttt 139  Q
     |||||||  || |||||| || |||||||    
T  4829967 caaatgaaatcacgttcctctataatgttt 4829938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 27436380 - 27436496
Alignment:
Q  11 aaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttta 110  Q
    |||||||||||||| ||||| |||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||     
T  27436380 aaaatcttaactaagctttaacttttg-ttaagaactctttccttggtttcgttcttaccttttgaaaaaggaacctattgcaatatctttaaaattttc 27436478  T
Q  111 aaatgaatccatgttcct 128  Q
    ||||||| ||||||||||    
T  27436479 aaatgaaaccatgttcct 27436496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 4949906 - 4949791
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 109  Q
    ||||||||||||||| ||||| |||||| ||| ||||| |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||    
T  4949906 aaaaatcttaactaagctttaacttttgttta-gaactctttccttggtttcgttcttaccttttgaaaaaggaatctattgcaatatctttacaatttt 4949808  T
Q  110 aaaatgaatccatgttc 126  Q
     |||||||  |||||||    
T  4949807 caaatgaaatcatgttc 4949791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 29024524 - 29024670
Alignment:
Q  15 tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaat 114  Q
    ||||||||||  ||||||||||| |||||||||||||||||||||||  ||||| | |||||||||||| ||| |||||||||||| |||||||| ||||    
T  29024524 tcttaactaagttttagcttttg-ttaagaactttttccttggtttcgttcttatcatttgaaaaagga-ccttttgcaatatcttcacaattttcaaat 29024621  T
Q  115 gaatccatgttcctttaaaatgtttataaattaactttggtaaatcctt 163  Q
    ||| ||||||| || || |||||||| |||||||||||| ||| |||||    
T  29024622 gaaaccatgtttctctacaatgtttaaaaattaactttgataagtcctt 29024670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 5207331 - 5207212
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||||||||||| |||||||||  |||||||| |||||||    
T  5207331 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattt 5207232  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  5207231 tcaaatgaaaccatgttcct 5207212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 27974446 - 27974327
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||||||||||||||||  |||||||||||||||||| |||||||||  |||||||| |||||||    
T  27974446 aaaatcttaactaagcttttagcttatgttaaagaactttttccttggtttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattt 27974347  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| | ||||||||    
T  27974346 tcaaatgaaacaatgttcct 27974327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 567372 - 567284
Alignment:
Q  41 aagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattttaaaatgaatccatgttcct 128  Q
    |||||||| ||||||||||||  |||||||||||||||||| |||||||||  |||||||| |||||||| ||||||| ||||||||||    
T  567372 aagaacttcttccttggtttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattttcaaatgaaaccatgttcct 567284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 8812828 - 8812953
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||||||  ||||||||  ||||| |||||||||| |||||| |||| || |||||    
T  8812828 acaacttcaaaa-atcttaactaagctttagcttttg-ttaagaactttttttttggtttcgttctta-cttttgaaaagggaaccaattggaacatctt 8812924  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  8812925 cacaattttcaaataaaacaatgttcctt 8812953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 13268453 - 13268328
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||| ||||| |||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  13268453 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaatttttttcttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 13268357  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  13268356 cacaattttcaaataaaacaatgttcctt 13268328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 840537 - 840680
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| ||||||||||  || | |||||| |||||||||||||||||||||||  ||||||| |||||| | ||||||  |||||||| |||    
T  840537 acaacttcaaaaa-tcttaactaagtttcaacttttg-ttaagaactttttccttggtttcgttcttacc-tttgaagagggaaccgtttgcaatacctt 840633  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaatta 147  Q
    || |||||| |||| | ||||||||| | || |||||||| ||||||    
T  840634 tataattttcaaataagtccatgttcttctacaatgtttacaaatta 840680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 847713 - 847856
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| ||||||||||  || | |||||| |||||||||||||||||||||||  ||||||| |||||| | ||||||  |||||||| |||    
T  847713 acaacttcaaaaa-tcttaactaagtttcaacttttg-ttaagaactttttccttggtttcgttcttacc-tttgaagagggaaccgtttgcaatacctt 847809  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaatta 147  Q
    || |||||| |||| | ||||||||| | || |||||||| ||||||    
T  847810 tataattttcaaataagtccatgttcttctacaatgtttacaaatta 847856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 1205717 - 1205860
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| ||||||||||  || | |||||| |||||||||||||||||||||||  ||||||| |||||| | ||||||  |||||||| |||    
T  1205717 acaacttcaaaaa-tcttaactaagtttcaacttttg-ttaagaactttttccttggtttcgttcttacc-tttgaagagggaaccgtttgcaatacctt 1205813  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaatta 147  Q
    || |||||| |||| | ||||||||| | || |||||||| ||||||    
T  1205814 tataattttcaaataagtccatgttcttctacaatgtttacaaatta 1205860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 13833857 - 13833990
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| | |||||||| ||||||||||||       ||| |||||||| ||||  |||||||||||||||||||||||  ||||||  ||||    
T  13833857 acaacttcaaaaatt-ttaactaagctttagcttttgt------actctttccttgatttcgttcttaccttttgaaaaaggaaccgtttgcaacgtctt 13833949  T
Q  101 tacaat-tttaaaatgaatccatgttcctttaaaatgttta 140  Q
    |||||| || |||||||| |||||||||| || ||||||||    
T  13833950 tacaatgttcaaaatgaagccatgttcctctacaatgttta 13833990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 16270475 - 16270381
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatat 97  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||  |||||  |||  |||||||||||| |||| ||||||||| ||||||    
T  16270475 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaactttccccttgagttcgctcttaccttttggaaaaagaacctattacaatat 16270381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 34136807 - 34136689
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| ||||| |||||| |||||||||||| |||||||||||  ||| | ||||| |||| |||||| ||||||| ||||| |||||||    
T  34136807 aaaaatcttaactaagctttatcttttg-ttaagaacttttatccttggtttcgttctca-cttttaaaaagggaaccaattgcaacatcttcacaattt 34136710  T
Q  109 taaaatgaatccatgttcctt 129  Q
    | |||| || | |||||||||    
T  34136709 tcaaataaaacaatgttcctt 34136689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 1959692 - 1959563
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||| |||||||||||||||| |||||||||| ||||||||||||  |||||| |||        ||||  |||||||||||||    
T  1959692 acaacttcaaaaa-tcttaattaaactttagcttttg-ttaagaacttcttccttggtttcgttcttactttt--------gaactgattgcaatatctt 1959603  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgttta 140  Q
    ||||||||| |||| ||   |||||||| || ||||||||    
T  1959602 tacaattttcaaataaagttatgttcctctacaatgttta 1959563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 567226 - 567191
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  567226 atttttgcataagcatatcatgcatcattttgcatt 567191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 5207148 - 5207113
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  5207148 atttttgcataagcatatcatgcatcattttgcatt 5207113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 13834035 - 13834070
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  13834035 atttttgcataagcatatcatgcatcattttgcatt 13834070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 23884652 - 23884568
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaac--tttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaa 94  Q
    ||||| ||||||||| |||||||||||| ||||||||  |||||||||||||||  ||||| |||||||||| |||||| |||||||    
T  23884652 aaaaaccttaactaagctttagcttttg-ttaagaactttttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaa 23884568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 27974267 - 27974232
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  27974267 atttttgcataagcatatcatgcatcattttgcatt 27974232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 803238 - 803203
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  803238 atttttgcataagcatatcatgcatcatcttgcatt 803203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 4949736 - 4949701
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4949736 atttttgcataagcatatcatgcctcattttgcatt 4949701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 16292105 - 16292070
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  16292105 atttttgcataagcatatcatgcatcatcttgcatt 16292070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 34136647 - 34136608
Alignment:
Q  180 tgtacatttttgcataagcatatcatgcatcattttgcat 219  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  34136647 tgtatatttttgcataagcatagcatgcatcattttgcat 34136608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 74337 - 74210
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||| ||||  | ||||||  |||||||||||||||||||||||||||||||||||||    
T  74337 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaacctttttttcggtttcgttcttaccttttgaaaaaggaacctattgcaatatctt 74240  T
Q  101 tacaattttaaaatgaatccatgttccttt 130  Q
    ||||||||| ||||||| ||||||||||||    
T  74239 tacaattttcaaatgaaaccatgttccttt 74210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 74162 - 74120
Alignment:
Q  179 ttgtacatttttgcataagcatatcatgcatcat-tttgcatt 220  Q
    |||| ||||||||||||||||||||||||||||| ||||||||    
T  74162 ttgtccatttttgcataagcatatcatgcatcatctttgcatt 74120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 20378863 - 20379025
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||  |||||||||| ||||||| ||||| |||||||||||    
T  20378863 acaacttcaaaaaaatcttaactaaactttagcttttg-ttaagaactttttctttggtttcgatcttacctttcgaaaaag-aaccttttgcaatatct 20378960  T
Q  100 ttacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
    | | |||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  20378961 tcataattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 20379025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 23638462 - 23638615
Alignment:
Q  9 aaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||||||||||  ||||| | |||||||||||| ||| |||||||||||| |||||||    
T  23638462 aaaaaatcttaactaagctttaacttttg-ttaagaactttttccttggtttcgttcttatcatttgaaaaagga-ccttttgcaatatcttcacaattt 23638559  T
Q  109 taaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
    | ||||||| |||||||  | || |||||||| |||||||||||| ||| ||||||    
T  23638560 tcaaatgaaaccatgtttatctacaatgtttaaaaattaactttgataagtccttc 23638615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 164
Target Start/End: Complemental strand, 23834427 - 23834274
Alignment:
Q  9 aaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||||||||||  ||||| | |||||||||||| ||| |||||||||||| |||||||    
T  23834427 aaaaaatcttaactaagctttaacttttg-ttaagaactttttccttggtttcgttcttatcatttgaaaaagga-ccttttgcaatatcttcacaattt 23834330  T
Q  109 taaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
    | ||||||| |||||||  | || |||||||| |||||||||||| ||| ||||||    
T  23834329 tcaaatgaaaccatgtttatctacaatgtttaaaaattaactttgataagtccttc 23834274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 24963003 - 24962877
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||| |||||||||| | |||||||||| ||||||| |||||||||||||||  ||||| |||||||||||| |||||||||||||||||    
T  24963003 acaacttcaaaaaaatcttaactaagccttagcttttg-ttaagaagtttttccttggtttcgttcttaacttttgaaaaag-aacctattgcaatatct 24962906  T
Q  100 ttacaattttaaaatgaatccatgttcct 128  Q
    |||||||||| ||||||| | ||||||||    
T  24962905 ttacaattttcaaatgaaactatgttcct 24962877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 28846305 - 28846460
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||| | ||||||||||||       |||||||||||||||||  |||||||||||||||||||| ||| ||||||||||||    
T  28846305 acaacttcaaaaa-tcttaactgagctttagcttttgt------actttttccttggtttcgttcttaccttttgaaaaagga-ccttttgcaatatctt 28846396  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
     |||||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  28846397 cacaattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 28846460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 12178801 - 12178682
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||||||||||| |||||||||  |||||||| |||||||    
T  12178801 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattt 12178702  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  12178701 tcaaatgaaaccatgttcct 12178682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 33843065 - 33842946
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||||||||||| |||||||||  |||||||| |||||||    
T  33843065 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttaccttttgaaaaagaaacctattgtaaatatcttgacaattt 33842966  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  33842965 tcaaatgaaaccatgttcct 33842946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 20097360 - 20097250
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||  ||||| |||||||||| | |||| ||||||| |||||    
T  20097360 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttgaaaaggaaaccaattgcaacatctt 20097264  T
Q  101 tacaattttaaaat 114  Q
     |||||||| ||||    
T  20097263 cacaattttcaaat 20097250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 11811654 - 11811535
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||| ||||||| |||||||||  |||||||| |||||||    
T  11811654 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttacctttggaaaaagaaacctattgtaaatatcttgacaattt 11811555  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  11811554 tcaaatgaaaccatgttcct 11811535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 26087570 - 26087451
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||| ||||||| |||||||||  |||||||| |||||||    
T  26087570 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttacctttggaaaaagaaacctattgtaaatatcttgacaattt 26087471  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  26087470 tcaaatgaaaccatgttcct 26087451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25528565 - 25528674
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| ||||||||||||  ||||||| ||||||||||||||| ||||| |||||||||| |||||| ||||||| |||||    
T  25528565 acaacttcaaaa-atcttaactaagctttagcttttg-ctaagaac-ttttccttggtttcattctta-cttttgaaaagggaaccaattgcaacatctt 25528660  T
Q  101 tacaattttaaaat 114  Q
     |||||||| ||||    
T  25528661 cacaattttcaaat 25528674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 22956848 - 22956723
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||  |||||||  ||| ||| |||||| ||||||| || ||    
T  22956848 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaactttttccttggtttcgttcttacc-cttggaaagggaaccaattgcaacatttt 22956752  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  22956751 cacaattttcaaataaaacaatgttcctt 22956723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 29895469 - 29895574
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||| |||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  29895469 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 29895565  T
Q  101 tacaatttt 109  Q
     ||||||||    
T  29895566 cacaatttt 29895574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 36450621 - 36450746
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||| |||||||||||||||  ||||| |||||||||  |||||| ||||||| |||||    
T  36450621 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaattttttccttggtttcgttctta-cttttgaaatgggaaccaattgcaacatctt 36450717  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  36450718 cacaattttcaaataaaacaatgttcctt 36450746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 21690966 - 21691067
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgtt 125  Q
    |||||||||||| |||||||||||||||||||||||  |||||| |||||||||||||||| || |||||||||| |||| ||| |||| || | |||||    
T  21690966 ctttagcttttg-ttaagaactttttccttggtttcgttcttac-ttttgaaaaaggaaccaatagcaatatcttcacaaatttcaaataaaacaatgtt 21691063  T
Q  126 cctt 129  Q
    ||||    
T  21691064 cctt 21691067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 7789218 - 7789318
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgtt 125  Q
    |||||||||||| |||||||||||||||||||||||  ||||| |||||| ||| |||||| |||||||  ||||||||||||| |||| || | |||||    
T  7789218 ctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttg-aaagggaaccaattgcaacgtctttacaatttttaaataaaacaatgtt 7789314  T
Q  126 cctt 129  Q
    ||||    
T  7789315 cctt 7789318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 12393302 - 12393202
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgtt 125  Q
    |||||||||||| |||||||||||||||||||||||  ||||| |||||| ||| |||||| |||||||  ||||||||||||| |||| || | |||||    
T  12393302 ctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttg-aaagggaaccaattgcaacgtctttacaatttttaaataaaacaatgtt 12393206  T
Q  126 cctt 129  Q
    ||||    
T  12393205 cctt 12393202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 217
Target Start/End: Complemental strand, 21866072 - 21865945
Alignment:
Q  89 ttgcaatatctttacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttcgatnnnnnnnnnnnttgtacattt 188  Q
    |||||||||||| |||||||| ||||||| |||||||| ||||| |||||||  |||| ||||||   |||||||||||           ||||| ||||    
T  21866072 ttgcaatatcttcacaattttcaaatgaaaccatgttcttttaagatgttta-caattcactttgacgaatccttcgataacaaaaaaatttgtatattt 21865974  T
Q  189 ttgcataagcatatcatgcatcattttgc 217  Q
    |||| ||||||||||||||||||||||||    
T  21865973 ttgcgtaagcatatcatgcatcattttgc 21865945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 26871420 - 26871555
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 109  Q
    ||||||||||||||| ||| | ||||| ||||||||||||||||||||||||  ||||||| |||||| | ||| ||  |||||||| ||||| || |||    
T  26871420 aaaaatcttaactaagcttcaactttt-attaagaactttttccttggtttcgttcttacc-tttgaagagggagccgtttgcaatacctttataaattt 26871517  T
Q  110 aaaatgaatccatgttcctttaaaatgtttataaatta 147  Q
     || | | ||||||||| | || |||||||| ||||||    
T  26871518 caactaagtccatgttcttctacaatgtttacaaatta 26871555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 1800523 - 1800623
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgtt 125  Q
    |||||||||||| ||||||||||||||||| |||||  |||||| ||||||||  |||||| |||||||  ||||||||||||| |||| || | |||||    
T  1800523 ctttagcttttg-ttaagaactttttccttagtttcgttcttac-ttttgaaag-ggaaccaattgcaacgtctttacaatttttaaataaaacaatgtt 1800619  T
Q  126 cctt 129  Q
    ||||    
T  1800620 cctt 1800623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 7259669 - 7259634
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  7259669 atttttgcataagcatatcatgcatcattttgcatt 7259634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 11811458 - 11811423
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  11811458 atttttgcataagcatatcatgcatcattttgcatt 11811423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 21994066 - 21993951
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||| | ||||||||||||       |||||||||||||||||  |||||||||||||||||||||||  |||| |  ||||    
T  21994066 acaacttcaaaaa-tcttaactgagctttagcttttgt------actttttccttggtttcgttcttaccttttgaaaaaggaaccgtttgcgacgtctt 21993974  T
Q  101 tacaat-tttaaaatgaatccat 122  Q
    |||||| || |||||||| ||||    
T  21993973 tacaatattcaaaatgaaaccat 21993951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 24962826 - 24962791
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  24962826 atttttgcataagcatatcatgcatcattttgcatt 24962791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 26087381 - 26087346
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  26087381 atttttgcataagcatatcatgcatcattttgcatt 26087346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 27231686 - 27231651
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  27231686 atttttgcataagcatatcatgcatcattttgcatt 27231651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 33842882 - 33842847
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  33842882 atttttgcataagcatatcatgcatcattttgcatt 33842847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 29895642 - 29895677
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  29895642 atttttgcataagcatagcatgcatcattttgcatt 29895677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 34464034 - 34464069
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  34464034 atttttgcataagcatatcatgcatcatcttgcatt 34464069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 21691131 - 21691165
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||| ||||||||||||||    
T  21691131 tttttgcataagcatatcatacatcattttgcatt 21691165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 20097195 - 20097162
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcat 219  Q
    |||||||||||||||| |||||||||||||||||    
T  20097195 tttttgcataagcatagcatgcatcattttgcat 20097162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 20667334 - 20667293
Alignment:
Q  179 ttgtacatttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||| |||||||||||||||||||||||| ||| ||||||||    
T  20667334 ttgtccatttttgcataagcatatcatgcgtcactttgcatt 20667293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 12178614 - 12178578
Alignment:
Q  185 atttttgcataagcatatcatgcatcat-tttgcatt 220  Q
    |||||||||||||||||||||||||||| ||||||||    
T  12178614 atttttgcataagcatatcatgcatcatctttgcatt 12178578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 31542314 - 31542440
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||| |||||||||| | |||||||||| ||||||| |||||||||||||||  ||||| |||||||||||| |||||||||||||||||    
T  31542314 acaacttcaaaaaaatcttaactaagccttagcttttg-ttaagaagtttttccttggtttcgttcttaacttttgaaaaag-aacctattgcaatatct 31542411  T
Q  100 ttacaattttaaaatgaatccatgttcct 128  Q
    |||||||||| ||||||| | ||||||||    
T  31542412 ttacaattttcaaatgaaactatgttcct 31542440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 127
Target Start/End: Original strand, 13471129 - 13471216
Alignment:
Q  41 aagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattttaaaatgaatccatgttcc 127  Q
    |||||||| ||||||||||||  |||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||    
T  13471129 aagaacttcttccttggtttcgttcttaccttttgaaaaagaaacctattgtcaatatctttacaattttcaaatgaaaccatgttcc 13471216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 1958206 - 1958325
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||||||||  ||||| |||||||||| |||||| ||||||| ||||| |||||||    
T  1958206 aaaaatcttaactaagctttagcttttg-ttaagaacttttatccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatcttcacaattt 1958303  T
Q  109 taaaatgaatccatgttccttt 130  Q
    | |||| || | ||||||||||    
T  1958304 tcaaataaaacaatgttccttt 1958325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2387527 - 2387738
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| ||| ||||||||       ||| |||||||||||||  ||||| |||||||||||||||||  ||||||  ||||    
T  2387527 acaacttcaaaaa-tcttaactaagcttaagcttttgt------actctttccttggtttcgttcttagcttttgaaaaaggaaccgtttgcaacgtctt 2387619  T
Q  101 tacaat-tttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttcgatnnnnnnnnnnnttgtacatttttgcataagca 199  Q
    |||||| || |||||||| |||||||||| || |||||||| |||||||||| | ||| |||||| |            || || |||||||||||||||    
T  2387620 tacaatgttcaaaatgaaaccatgttcctctacaatgtttagaaattaacttcgataagtccttcaa--aaataaaaatttatatatttttgcataagca 2387717  T
Q  200 tatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||    
T  2387718 tatcatgcatcattttgcatt 2387738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 2341386 - 2341268
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaac-tttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||| ||| |||||| ||| || ||||||| ||||| |||||||    
T  2341386 aaaaatcttaactaagctttagcttttg-ttaagaacttttttccttggtttcattctta-cttatgaaaagggatccaattgcaacatcttcacaattt 2341289  T
Q  109 taaaatgaatccatgttcctt 129  Q
    | |||| || | |||||||||    
T  2341288 tcaaataaaacaatgttcctt 2341268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 6202869 - 6202744
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| || ||||||| |||||||||||| |||||||||||||||||||||||  ||||| |||||||||| |||||| || |||| |||||    
T  6202869 acaacttcaaaaa-tcataactaagctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttgaaaagggaaccaatagcaacatctt 6202773  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||| ||| |||| || | |||||||||    
T  6202772 cacaaatttcaaataaaacaatgttcctt 6202744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 14817979 - 14817873
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||     || |||||||||| |||||  ||||||| |||||    
T  14817979 acaacttcaaaaaatcttaactaagctttagcttttg-ttatgaactttttccttggtttc-----ta-cttttgaaaagggaacaaattgcaacatctt 14817887  T
Q  101 tacaattttaaaat 114  Q
     |||||||| ||||    
T  14817886 cacaattttcaaat 14817873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 35071948 - 35072073
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  |||||||||  ||||||||||| ||||||| |||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  35071948 acaacttcaaaaac-cttaactaagttttagcttttg-ttaagaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 35072044  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
      ||||||| |||| || | |||||||||    
T  35072045 ctcaattttcaaataaaacaatgttcctt 35072073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 22430305 - 22430420
Alignment:
Q  11 aaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttta 110  Q
    |||||||||||||| ||||||||||   |||||||||||||||||| ||||  ||||  |||||||||| |||||| ||||||| ||||| ||||||||     
T  22430305 aaaatcttaactaagctttagcttt--cttaagaactttttccttgatttcgttctt-gcttttgaaaagggaaccaattgcaacatcttcacaattttc 22430401  T
Q  111 aaatgaatccatgttcctt 129  Q
    |||| || | |||||||||    
T  22430402 aaataaaacaatgttcctt 22430420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 6202695 - 6202660
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  6202695 atttttgcataagcatatcatgcatcattttgcatt 6202660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 13471270 - 13471305
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  13471270 atttttgcataagcatatcatgcatcattttgcatt 13471305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 31542492 - 31542527
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  31542492 atttttgcataagcatatcatgcatcattttgcatt 31542527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31554518 - 31554592
Alignment:
Q  1 acaacttcaaaaaa-tcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttg 75  Q
    |||||||||||||| ||||||||||  |||| |||||| ||||||||||||||||||||||   ||||||||||||    
T  31554518 acaacttcaaaaaaatcttaactaagttttaacttttg-ttaagaactttttccttggttttgatcttaccttttg 31554592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 35072121 - 35072156
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  35072121 atttttgcataagcatatcatgcatcattttgcatt 35072156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 14817807 - 14817772
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  14817807 atttttgcataagcatagcatgcatcattttgcatt 14817772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 19371170 - 19371262
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaata 96  Q
    ||||||||||||| |||||||||| ||| | |||||| |||||||||||||||||| ||||  ||||| | |||||| ||||||||  ||||||||    
T  19371170 acaacttcaaaaa-tcttaactaagcttcaacttttg-ttaagaactttttccttgatttcgttcttatc-tttgaagaaggaaccgtttgcaata 19371262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 19371339 - 19371374
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||| |||||||||||    
T  19371339 atttttgcataagcatatcatgcaccattttgcatt 19371374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 3359601 - 3359738
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttg-aaaaaggaacctattgcaatatct 99  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||| |||||| |||  |||||||||||| |||||  |||||||||||||||||    
T  3359601 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaacttttcccttgggttcgctcttaccttttggaaaaaaaaacctattgcaatatct 3359698  T
Q  100 ttacaattttaaaatgaatccatgttcctttaaaatgttt 139  Q
    |||||||||| ||||||| | |||||| | || |||||||    
T  3359699 ttacaattttcaaatgaaacaatgttcttctataatgttt 3359738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 8100788 - 8100633
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||| | ||||||||||||       |||||||||||||||||  |||||||||||||||||||| ||| ||||||||||||    
T  8100788 acaacttcaaaaa-tcttaactgagctttagcttttgt------actttttccttggtttcgttcttaccttttgaaaaagga-ccttttgcaatatctt 8100697  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
     |||||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  8100696 cacaattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 8100633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 20556284 - 20556409
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||| |||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  20556284 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 20556380  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  20556381 cacaattttcaaataaaacaatgttcctt 20556409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 15077423 - 15077297
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactt-tttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||| |||||||||||||  ||||| |||||||||| |||||| ||||||| ||||    
T  15077423 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaacttctttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatct 15077327  T
Q  100 ttacaattttaaaatgaatccatgttcctt 129  Q
    | |||| ||| |||| || | |||||||||    
T  15077326 tcacaactttcaaataaaacaatgttcctt 15077297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 15079729 - 15079603
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaa-ctttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||  |||||||||||||||  ||||| |||||||||| |||||| ||||||| ||||    
T  15079729 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaatttttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatct 15079633  T
Q  100 ttacaattttaaaatgaatccatgttcctt 129  Q
    | |||||||| |||| || | |||||||||    
T  15079632 tcacaattttcaaataaaacaatgttcctt 15079603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 15900639 - 15900529
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||  ||||| |||||||||| ||| || ||||||| |||||    
T  15900639 acaacttcaaaaa-tcttaactaagctttagctttt-attaagaactttttcctcggtttcgttctta-cttttgaaaagggagccaattgcaacatctt 15900543  T
Q  101 tacaattttaaaat 114  Q
     |||||||| ||||    
T  15900542 cacaattttcaaat 15900529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 22706380 - 22706480
Alignment:
Q  27 tttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgttc 126  Q
    ||||||||||| | |||||||||||||||||||||  |||||| |||||||||||||||| || |||||||||| |||| ||| |||| || | ||||||    
T  22706380 tttagcttttgct-aagaactttttccttggtttcgttcttac-ttttgaaaaaggaaccaatagcaatatcttcacaaatttcaaataaaacaatgttc 22706477  T
Q  127 ctt 129  Q
    |||    
T  22706478 ctt 22706480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 26218387 - 26218314
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttg 75  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||||||||||||   ||||||||||||    
T  26218387 acaacttcaaaaaatcttaactaagttttaacttttg-ttaagaactttttccttggttttgatcttaccttttg 26218314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 14883914 - 14884023
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| |||||||||||| |||| | |||||||| |||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  14883914 acaacttcaaaa-atcttaactaagctttagcttttg-ttaatagctttttcc-tggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 14884009  T
Q  101 tacaattttaaaat 114  Q
     |||||||| ||||    
T  14884010 cacaattttcaaat 14884023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 3386248 - 3386123
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  |||||||||  ||||||||||| |||||||  ||||||||||||||  ||||| |||||||||| | |||| ||||||| |||||    
T  3386248 acaacttcaaaaac-cttaactaagttttagcttttg-ttaagaatattttccttggtttcgttctta-cttttgaaaaggtaaccaattgcaacatctt 3386152  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  3386151 cacaattttcaaattaaacaatgttcctt 3386123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 18038648 - 18038771
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||  |||||||||||||  ||||| |||||| ||| |||||| ||||||| | |||    
T  18038648 acaacttcaaaa-atcttaactaagctttagcttttg-ttaagaac-ctttccttggtttcgttctta-cttttg-aaagggaaccaattgcaacacctt 18038742  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
    ||||||||| |||| || | |||||||||    
T  18038743 tacaatttttaaataaaacaatgttcctt 18038771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 9187209 - 9187337
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaac---tttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatat 97  Q
    |||||||||||||  |||||| || |||||||||||| ||||||||   |||||||||||||||  ||||| |||||||||| | |||| ||||||| ||    
T  9187209 acaacttcaaaaac-cttaacgaagctttagcttttg-ttaagaactattttttccttggtttcgttctta-cttttgaaaaggaaaccaattgcaacat 9187305  T
Q  98 ctttacaattttaaaatgaatccatgttcctt 129  Q
    ||| |||||||| |||| || | |||||||||    
T  9187306 cttcacaattttcaaataaaacaatgttcctt 9187337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 21529317 - 21529240
Alignment:
Q  64 tcttaccttttgaaaaaggaacctattgcaatatctttacaat-tttaaaatgaatccatgttcctttaaaatgttta 140  Q
    |||||||||||||||||||||||  ||||||  |||||||||| || |||||||| |||||||||| || ||||||||    
T  21529317 tcttaccttttgaaaaaggaaccgtttgcaacgtctttacaatgttcaaaatgaagccatgttcctctacaatgttta 21529240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 14919900 - 14919935
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  14919900 atttttgcataagcatatcatgcatcattttgcatt 14919935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 3841788 - 3841683
Alignment:
Q  11 aaaatcttaactaaactttagcttttgattaagaac----tttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaat 106  Q
    |||||||||||||| |||||||||||| ||||||||    |||||||||||||||  ||||| |||||||||| |||||| |||  || ||||| |||||    
T  3841788 aaaatcttaactaagctttagcttttg-ttaagaacttcttttttccttggtttcgttctta-cttttgaaaagggaaccaattagaacatcttcacaat 3841691  T
Q  107 tttaaaat 114  Q
    ||| ||||    
T  3841690 tttcaaat 3841683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 16725730 - 16725696
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||||||||||    
T  16725730 tttttgcataagcatatcatgcatcattttgcatt 16725696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 18386126 - 18386038
Alignment:
Q  39 ttaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgttcctt 129  Q
    |||||||||||||||||||||||  ||||| |||||| ||| |||| | ||||||| |||||||||||||| |||| || | |||||||||    
T  18386126 ttaagaactttttccttggtttcgttctta-cttttg-aaagggaatcaattgcaacatctttacaattttcaaataaaacaatgttcctt 18386038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 21529189 - 21529156
Alignment:
Q  187 ttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||    
T  21529189 ttttgcataagcatatcatgcatcattttgcatt 21529156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 3386074 - 3386039
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  3386074 atttttgcataagcatagcatgcatcattttgcatt 3386039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 20556453 - 20556492
Alignment:
Q  180 tgtacatttttgcataagcatatcatgcatcattttgcat 219  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  20556453 tgtatatttttgcataagcatagcatgcatcattttgcat 20556492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 3841618 - 3841584
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||| ||||||||||||||    
T  3841618 tttttgcataagcatatcatacatcattttgcatt 3841584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 9187386 - 9187420
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcat 219  Q
    ||||||||||||||||| |||||||||||||||||    
T  9187386 atttttgcataagcatagcatgcatcattttgcat 9187420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 18038820 - 18038854
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||| ||||||||||||||    
T  18038820 tttttgcataagcatatcatacatcattttgcatt 18038854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 22706531 - 22706565
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||| ||||||||||||||    
T  22706531 tttttgcataagcatatcatacatcattttgcatt 22706565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0582 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 5032 - 4904
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 109  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||||||  |||||| |||  |||||||||||||| ||||||| ||||||| |||    
T  5032 aaaaatcttaactaagctttaggttttg-ttaagaactttttccttggtttcgttcttacttttgaaaaaaggaacctatcgcaatatatttacaacttt 4934  T
Q  110 aaaatgaatccatgttcctttaaaatgttt 139  Q
     ||||||| |||| ||||| || |||||||    
T  4933 caaatgaaaccatattcctctataatgttt 4904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 2089 - 2205
Alignment:
Q  11 aaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttta 110  Q
    ||||||||||||||  |||| || ||| ||||||||| |||| |||||||   ||||||||||||||||||||||||||||||||||||||| ||||||     
T  2089 aaaatcttaactaagttttaactgttg-ttaagaactctttcgttggttttgttcttaccttttgaaaaaggaacctattgcaatatctttaaaattttc 2187  T
Q  111 aaatgaatccatgttcct 128  Q
    ||||||| ||||||||||    
T  2188 aaatgaaaccatgttcct 2205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 2255 - 2290
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  2255 atttttgcataagcatatcatgcatcattttgcatt 2290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 17680644 - 17680490
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| ||||||||||||       ||| |||||||||||||  |||||||||||||||||||| ||| ||||||||||||    
T  17680644 acaacttcaaaaa-tcttaactaagctttagcttttgt------actctttccttggtttcgttcttaccttttgaaaaagga-ccttttgcaatatctt 17680553  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatcctt 163  Q
     |||||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| |||||    
T  17680552 cacaattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtcctt 17680490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 20736106 - 20736210
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||||||||  |||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  20736106 aaaaatcttaactaagctttagcttttg-ttaagaacttttatccttggtttcgttcttactttttgaaaagggaaccaattgcaacatcttcacaattt 20736204  T
Q  109 taaaat 114  Q
    | ||||    
T  20736205 tcaaat 20736210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 20744664 - 20744768
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||||||||  |||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  20744664 aaaaatcttaactaagctttagcttttg-ttaagaacttttatccttggtttcgttcttactttttgaaaagggaaccaattgcaacatcttcacaattt 20744762  T
Q  109 taaaat 114  Q
    | ||||    
T  20744763 tcaaat 20744768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 39843299 - 39843144
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| ||||| ||||||       ||| |||||||||||||  |||||||||||||||||||  ||| ||||||||||||    
T  39843299 acaacttcaaaaa-tcttaactaagctttaccttttgt------actctttccttggtttcgttcttaccttttgaaaaaggg-ccttttgcaatatctt 39843208  T
Q  101 tacaattttaaaatgaatccatgttcctttaaaatgtttataaattaactttggtaaatccttc 164  Q
     |||||||| ||||||| ||||||| || ||  ||||||| |||||||||||| ||| ||||||    
T  39843207 cacaattttcaaatgaaaccatgtttctctaccatgtttaaaaattaactttgataagtccttc 39843144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 20741148 - 20741252
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| |||||||||||| || ||||||||| |||||||||||  |||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  20741148 aaaaatcttaactaagctttagcttttg-tttagaacttttatccttggtttcgttcttactttttgaaaagggaaccaattgcaacatcttcacaattt 20741246  T
Q  109 taaaat 114  Q
    | ||||    
T  20741247 tcaaat 20741252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 22160830 - 22160705
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||| ||| |||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  22160830 acaacttcaaaaac-cttaactaagctttagcttttg-ttatgaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 22160734  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  22160733 cacaattttcaaataaaacaatgttcctt 22160705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 24709217 - 24709092
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||  |||||||||| |||||||||||| ||||||| || |||||||| |||  ||||   ||||||||| |||||| |||||||||||||    
T  24709217 acaacttcaaaag-tcttaactaagctttagcttttg-ttaagaatttcttccttggcttcgttcttgttttttgaaaagggaaccgattgcaatatctt 24709120  T
Q  101 tacaattttaaaatgaatccatgttcct 128  Q
    ||||||||| || | || ||||||||||    
T  24709119 tacaattttcaattaaaaccatgttcct 24709092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 6666111 - 6666238
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaat-tt 108  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||   |||  ||||||||| |  |||||| ||| ||||||| ||    
T  6666111 aaaaatcttaactaagctttagcttttg-ttaagaactttttccttggtttcgttctt---tttgaaaaaaggaatcgtttgcaacatccttacaatgtt 6666206  T
Q  109 taaaatgaatccatgttcctttaaaatgttta 140  Q
    ||||||||| |||| ||||| || ||||||||    
T  6666207 taaaatgaaaccattttcctctacaatgttta 6666238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 25856976 - 25856871
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| ||||||||||||  |||||| |||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  25856976 acaacttcaaaaac-cttaactaagctttagcttttg-ctaagaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 25856880  T
Q  101 tacaatttt 109  Q
     ||||||||    
T  25856879 cacaatttt 25856871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 32002144 - 32002261
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||| ||| |||||||||||| |||||||||||| |||||||||||  ||||| |||||| |||||||||| ||||||| ||||| |||||||    
T  32002144 aaaaatcttaattaagctttagcttttg-ttaagaacttttatccttggtttcgttctta-cttttg-aaaaggaaccaattgcaacatcttcacaattt 32002240  T
Q  109 taaaatgaatccatgttcctt 129  Q
    | |||| || | |||||||||    
T  32002241 tcaaataaaacaatgttcctt 32002261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 6666284 - 6666318
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||||||||||    
T  6666284 tttttgcataagcatatcatgcatcattttgcatt 6666318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 32002309 - 32002344
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32002309 atttttgcataagcatagcatgcatcattttgcatt 32002344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 25856803 - 25856769
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcat 219  Q
    ||||||||||||||||| |||||||||||||||||    
T  25856803 atttttgcataagcatagcatgcatcattttgcat 25856769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 3858 - 3984
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactt-tttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||||||||  ||||| |||||||||| |||||| ||||||| ||||    
T  3858 acaacttcaaaa-atcttaactaagctttagcttttg-ttaagaacttctttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatct 3954  T
Q  100 ttacaattttaaaatgaatccatgttcctt 129  Q
    | |||||||| |||| || | |||||||||    
T  3955 tcacaattttcaaataaaacaatgttcctt 3984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 8701 - 8805
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||||||||  |||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  8701 aaaaatcttaactaagctttagcttttg-ttaagaacttttatccttggtttcgttcttactttttgaaaagggaaccaattgcaacatcttcacaattt 8799  T
Q  109 taaaat 114  Q
    | ||||    
T  8800 tcaaat 8805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 8871 - 8906
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8871 atttttgcataagcatagcatgcatcattttgcatt 8906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 4049 - 3946
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 109  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||||||||  ||||| |||||||||| | |||| ||||||| ||||| ||||||||    
T  4049 aaaaatcttaactaaactgtagcttttttttaagaactttttccttggtttcgttctta-cttttgaaaaggaaaccaattgcaacatcttcacaatttt 3951  T
Q  110 aaaat 114  Q
     ||||    
T  3950 caaat 3946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 3883 - 3849
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcat 219  Q
    ||||||||||||||||| |||||||||||||||||    
T  3883 atttttgcataagcatagcatgcatcattttgcat 3849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 18013 - 18138
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||||  ||||||||| |||||||||||| ||||||| |||||||||||||||  ||||| |||||||||| |||||| ||||||| |||||    
T  18013 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatctt 18109  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  18110 cacaattttcaaataaaacaatgttcctt 18138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 192398 - 192296
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 109  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||| |||||||||| |||||  ||||||| ||||| ||||||||    
T  192398 aaaaatcttaactaagctttagcttttg-ttaagaactttttccttggtttcgttctta-cttttgaaaagggaacaaattgcaacatcttcacaatttt 192301  T
Q  110 aaaat 114  Q
     ||||    
T  192300 caaat 192296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2162 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold2162
Description:

Target: scaffold2162; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 253 - 372
Alignment:
Q  11 aaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattg-caatatctttacaattt 108  Q
    |||||||||||||| |||| ||||| || | |||||||| ||||||||||||  |||||||||| ||||||| |||||||||  |||||||| |||||||    
T  253 aaaatcttaactaagcttttagcttatgttaaagaacttcttccttggtttcgttcttacctttggaaaaagaaacctattgtaaatatcttgacaattt 352  T
Q  109 taaaatgaatccatgttcct 128  Q
    | ||||||| ||||||||||    
T  353 tcaaatgaaaccatgttcct 372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2162; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 454 - 489
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  454 atttttgcataagcatatcatgcatcattttgcatt 489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 8363 - 8481
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    ||||||||||| ||| |||||||||||| || ||||||||| |||||||||||| ||||| |||||||||| |||||| ||||||| ||||| |||||||    
T  8363 aaaaatcttaattaagctttagcttttg-ttgagaacttttatccttggtttcattctta-cttttgaaaagggaaccaattgcaacatcttcacaattt 8460  T
Q  109 taaaatgaatccatgttcctt 129  Q
    | |||| || | |||||||||    
T  8461 tcaaataaaacaatgttcctt 8481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 5141 - 5023
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaac-tttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||  ||||| |||||||||| |||| | ||||||| ||||| |||| ||    
T  5141 aaaaatcttaactaaactttagcttttg-ttaagaacttttttccttggtttcgttctta-cttttgaaaagggaatcaattgcaacatcttcacaaatt 5044  T
Q  109 taaaatgaatccatgttcctt 129  Q
    | |||| || | |||||||||    
T  5043 tcaaataaaacaatgttcctt 5023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 4973 - 4938
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  4973 atttttgcataagcatatcatgcatcattttgcatt 4938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 11087 - 11052
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  11087 atttttgcataagcatatcatgcatcattttgcatt 11052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 31245 - 31371
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    |||||||||||| ||||||||||| ||| | |||||| | |||||||||||||||||||||  ||| | |||||||||| |||||| ||||||| |||||    
T  31245 acaacttcaaaa-atcttaactaagcttcaacttttgttaaagaactttttccttggtttcgttctca-cttttgaaaagggaaccaattgcaacatctt 31342  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     |||||||| |||| || | |||||||||    
T  31343 cacaattttcaaataaaacaatgttcctt 31371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 31419 - 31454
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||| ||||    
T  31419 atttttgcataagcatatcatgcatcattttacatt 31454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 37295 - 37167
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaac-tttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||||  ||||| |||||||||| |||||  ||||||| ||||    
T  37295 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaacttttttccttggtttcgttctta-cttttgaaaagggaactaattgcaacatct 37199  T
Q  100 ttacaattttaaaatgaatccatgttccttta 131  Q
    | |||| ||| |||| || | |||||||||||    
T  37198 tcacaaatttcaaataaaacaatgttccttta 37167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 37120 - 37085
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  37120 atttttgcataagcatatcatgcatcattttgcatt 37085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 129
Target Start/End: Complemental strand, 22944 - 22843
Alignment:
Q  26 ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattttaaaatgaatccatgtt 125  Q
    |||||||||||| |||||||||||||||||||||||  |||||| |||||||||||||||| || |||||||||| |||| ||| |||| || | |||||    
T  22944 ctttagcttttg-ttaagaactttttccttggtttcgttcttac-ttttgaaaaaggaaccaatagcaatatcttcacaaatttcaaataaaacaatgtt 22847  T
Q  126 cctt 129  Q
    ||||    
T  22846 cctt 22843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 22779 - 22745
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||| ||||||||||||||    
T  22779 tttttgcataagcatatcatacatcattttgcatt 22745  T

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Target: scaffold0019 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 19488 - 19391
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 109  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||||||||   ||||||| |||||||| |||||| ||||||| ||||| ||||||||    
T  19488 aaaaatcttaactaagctttagcttttg-ttaagaaatttttccttggttttgttcttacc-tttgaaaagggaaccaattgcaacatcttcacaatttt 19391  T

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Target: scaffold0001 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 109
Target Start/End: Original strand, 98995 - 99092
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatttt 109  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||||||  |||||  ||||||||| |||||| ||||||| ||||| ||||||||    
T  98995 aaaaatcttaactaatctttaacttttg-ttaagaactttttccttggtttcgttctta-gttttgaaaagggaaccaattgcaacatcttcacaatttt 99092  T

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Target: scaffold0202 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 25490 - 25379
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaacttttt-ccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||||||| |||||||||| |||||||||||| ||||||| ||||| ||||||||||  ||||| |||||||||| |||||| ||||||| ||||    
T  25490 acaacttcaaaaa-tcttaactaagctttagcttttg-ttaagaaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatct 25394  T
Q  100 ttacaattttaaaat 114  Q
    | |||||||| ||||    
T  25393 tcacaattttcaaat 25379  T

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Target: scaffold0364 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 206 - 80
Alignment:
Q  1 acaacttcaaaaaatcttaactaaacttt-agcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    |||||||||||||  |||||||||| ||| |||||||| ||||||| |||||||||||||||  ||||| |||||||||| |||||| ||||||| ||||    
T  206 acaacttcaaaaac-cttaactaaagttttagcttttg-ttaagaattttttccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatct 110  T
Q  100 ttacaattttaaaatgaatccatgttcctt 129  Q
    | |||||||| |||| || | |||||||||    
T  109 tcacaattttcaaataaaacaatgttcctt 80  T

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Target: scaffold0005 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 301326 - 301436
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| ||||| |||||| ||||||||||| |||||||||||| ||||| |||||||||| |||| | ||||||  |||||    
T  301326 acaacttcaaaaa-tcttaactaagctttaacttttg-ttaagaactttctccttggtttcactctta-cttttgaaaagggaagcaattgcagcatctt 301422  T
Q  101 tacaattttaaaat 114  Q
     |||||||| ||||    
T  301423 cacaattttcaaat 301436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0327 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0327
Description:

Target: scaffold0327; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 17411 - 17536
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| || ||||||| |||||||||||| ||||||| |||||||||||||||  ||||| |||||| ||| |||||| ||||||| |||||    
T  17411 acaacttcaaaaa-tcataactaagctttagcttttg-ttaagaaatttttccttggtttcgttctta-cttttggaaagggaaccaattgcaacatctt 17507  T
Q  101 tacaattttaaaatgaatccatgttcctt 129  Q
     ||| |||| |||| || | |||||||||    
T  17508 cacatttttcaaataaaacaatgttcctt 17536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 33988 - 33905
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaa 94  Q
    ||||||||||||||| || ||||||||| | |||||||||||||||||||||  ||||| |||||||||| |||||| |||||||    
T  33988 aaaaatcttaactaagctatagcttttgttaaagaactttttccttggtttccttctta-cttttgaaaagggaaccaattgcaa 33905  T

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Target: scaffold0243 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 16909 - 17012
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaattt 108  Q
    |||||||||||||||  ||||||||||| |||||||||||| |||||||||||| ||||| ||||||||||  ||||  ||||||| ||||| |||||||    
T  16909 aaaaatcttaactaagttttagcttttg-ttaagaacttttatccttggtttcattctta-cttttgaaaagagaacaaattgcaacatcttcacaattt 17006  T
Q  109 taaaat 114  Q
    | ||||    
T  17007 tcaaat 17012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 17062 - 17096
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||| ||||||||||||||    
T  17062 tttttgcataagcatatcatacatcattttgcatt 17096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10524 - 10626
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctt 100  Q
    ||||||||||||| |||||||||| ||||| |||||| |||||||||||| ||||||||||  |||||| ||||||||| |||||| ||| ||| |||||    
T  10524 acaacttcaaaaa-tcttaactaagctttaccttttg-ttaagaactttt-ccttggtttcgttcttactttttgaaaagggaaccaattacaacatctt 10620  T
Q  101 tacaat 106  Q
     |||||    
T  10621 aacaat 10626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 11638 - 11699
Alignment:
Q  78 aaaggaacctattgcaatatctttacaattttaaaatgaatccatgttcctttaaaatgttt 139  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| |||||| || |||||||    
T  11638 aaaggaacctattgcaatatctttacaattttcaaatgaaaccaggttcctctataatgttt 11699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 11740 - 11774
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||| |||||||    
T  11740 tttttgcataagcatatcatgcatcatcttgcatt 11774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 209 - 115
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaa 105  Q
    ||||||||||||||| |||||||||||| ||| |||||||| |||||||||||  ||||| |||||||||| |||||| ||||||| ||||| ||||    
T  209 aaaaatcttaactaagctttagcttttg-ttatgaacttttatccttggtttcgttctta-cttttgaaaagggaaccaattgcaacatcttcacaa 115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 41 - 6
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  41 atttttgcataagcatatcatgcatcattttgcatt 6  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 12335 - 12457
Alignment:
Q  1 acaacttcaaaaaatcttaactaaa-ctttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatct 99  Q
    ||||||||||||| ||||||||||| ||||||||||||       ||| |||||||||||||  |||||||||||||||||||||||  ||||||   ||    
T  12335 acaacttcaaaaa-tcttaactaaagctttagcttttgt------actctttccttggtttcgttcttaccttttgaaaaaggaaccgtttgcaacgact 12427  T
Q  100 ttacaat-tttaaaatgaatccatgttcct 128  Q
    ||||||| || |||||||| ||||||||||    
T  12428 ttacaatattcaaaatgaaaccatgttcct 12457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 30815 - 30886
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttt-tccttggtttcagtcttaccttttgaaaaagg 82  Q
    ||||||||||||||| |||||||||||| |||||||||||| |||||||||||  ||||| |||||||||||||    
T  30815 aaaaatcttaactaagctttagcttttg-ttaagaacttttatccttggtttcgttctta-cttttgaaaaagg 30886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 144520 - 144395
Alignment:
Q  10 aaaaatcttaactaaactttagcttttgattaagaactttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaat-tt 108  Q
    ||||||||||||||| ||||||||||      || ||| |||||||||||||  |||||||||||||||||| ||||  ||||||  |||||||||| |     
T  144520 aaaaatcttaactaagctttagcttt------agtactctttccttggtttcgttcttaccttttgaaaaagaaaccgtttgcaacgtctttacaatgtc 144427  T
Q  109 taaaatgaatccatgttcctttaaaatgttta 140  Q
     |||||||| |||||||||  || ||||||||    
T  144426 caaaatgaagccatgttccactacaatgttta 144395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 144356 - 144321
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  144356 atttttgcataagcatatcatgcatcattttgcatt 144321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 14315 - 14280
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    ||||||||||||||||||||||||||||||||||||    
T  14315 atttttgcataagcatatcatgcatcattttgcatt 14280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 31740 - 31640
Alignment:
Q  10 aaaaatcttaactaaa-ctttagcttttgattaagaact-ttttccttggtttcagtcttaccttttgaaaaaggaacctattgcaatatctttacaatt 107  Q
    |||||||||||| ||| |||||||||||| | ||||||| ||||||||||||||  ||||| |||||||||| |||||  ||||||| ||||| | ||||    
T  31740 aaaaatcttaaccaaagctttagcttttgttaaagaacttttttccttggtttcgttctta-cttttgaaaagggaactaattgcaacatcttcataatt 31642  T
Q  108 tt 109  Q
    ||    
T  31641 tt 31640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0782 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0782
Description:

Target: scaffold0782; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 5903 - 5938
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  5903 atttttgcataagcatatcatgcatcatcttgcatt 5938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 6797 - 6762
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||| |||||||||||||||||||||||||||||    
T  6797 atttttacataagcatatcatgcatcattttgcatt 6762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 184212 - 184177
Alignment:
Q  185 atttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||||||||||||||| |||||||    
T  184212 atttttgcataagcatatcatgcatcatcttgcatt 184177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 9585 - 9619
Alignment:
Q  186 tttttgcataagcatatcatgcatcattttgcatt 220  Q
    |||||||||||||||| ||||||||||||||||||    
T  9585 tttttgcataagcataacatgcatcattttgcatt 9619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20673 - 20598
Alignment:
Q  1 acaacttcaaaaaatcttaactaaactttagcttttgattaagaac-tttttccttggtttcagtcttaccttttgaaa 78  Q
    |||||||||||||  ||||||||| |||||||||||| |||||||| |||||||||||||||  ||||| |||||||||    
T  20673 acaacttcaaaaac-cttaactaagctttagcttttg-ttaagaacttttttccttggtttctttctta-cttttgaaa 20598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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