View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_high_2 (Length: 835)
Name: NF6998_high_2
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-176; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 480 - 805
Target Start/End: Original strand, 8309456 - 8309781
Alignment:
| Q |
480 |
ctaacctaaggctgaaggagctgcactacacattcacattgttttagtcatattttcagtacactatttttctatatagatccatctctaattacaccca |
579 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8309456 |
ctaacctaaggctgaaggagctgcactacacattcatattgttttagtcatattttcagtacactatttttctatatagatccatctctaattacaccca |
8309555 |
T |
|
| Q |
580 |
aatgttgctttcctcccacctagttaacttttctccaatcaaaggaaatcggagtttgcttgtcctgattgtaagattcgttatctttgaacacaaacaa |
679 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8309556 |
aatgttgctttcctcccacctagttaacttttctccaatcaaaggaaatcggagtttgcttgtcctgattgtaagaatcgttatctttgaacacaaacaa |
8309655 |
T |
|
| Q |
680 |
tataacatgaagataaccgacattaatccttcattggttttaaataaataagcaaaaagaagcaaccatacaagataatctagcaaaacgcacgaaagca |
779 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8309656 |
tataacatgaagataaccgacattaatccttcattggttttaaataaataagcaaaaagaagcaaccatacaagataatctagcaaaacgcgcgaaagca |
8309755 |
T |
|
| Q |
780 |
ttgatattaatcataaatgagaatat |
805 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
8309756 |
ttgatattaatcataaatgagaatat |
8309781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 121 - 417
Target Start/End: Original strand, 8309097 - 8309393
Alignment:
| Q |
121 |
ccagcgtaatttattaaaaacaagatactttaaatgccccaaaagagtttgaatttcagcattcagtcgttcaaccattgaagaaaacacacttccgtga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8309097 |
ccagcgtaatttattaaaaacaagatactttaaatgccccaaaagagtttgaatttcagcattcagtcgttcaaccattgaagaaaacacacttccgtga |
8309196 |
T |
|
| Q |
221 |
gttctttcaccaccagactcaatgatgctaatttatatctatcttcctgcaaatgaaagaaaacggaagcaaattaatatataatcaatatgaatattaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8309197 |
gttctttcaccaccagactcaatgatgctaatttatatctatcttcctgcaaatgaaagaaaacggaagcaaattaatatataatcaatatgaatattaa |
8309296 |
T |
|
| Q |
321 |
taacaaagttacctttttcatattatatactacaatcaatcctggtcctagatagctacataaaaaccattcaagtaatatctatacaagacatatg |
417 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8309297 |
taacaaagttacctttttcatattatatagtacaatcaatcctggtcctagatagctacataaaaaccattcaagtaatatctatacaagacatatg |
8309393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8308971 - 8309060
Alignment:
| Q |
1 |
attttgaaaatgttaagcaacaaaggtgttcatactttaaattgcaaactttgatgatgaaggataggcaacaagaaatagcgatgttat |
90 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8308971 |
attttgaaaattttaagcaacaaaggtgttcatactttaaattgcaaactttgatgatgaaggataggcaacaagaaatagcgatgttat |
8309060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 239 - 417
Target Start/End: Original strand, 8299744 - 8299916
Alignment:
| Q |
239 |
tcaatgatgctaatttatatctatcttcctgcaaatgaaagaaaacggaagcaaattaatatataatcaatatgaatattaataacaaagttaccttttt |
338 |
Q |
| |
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||||||||||| || ||||||||||| ||||||||||||||| |||||||| ||| |||| ||||||| ||| |||||||| ||||||| |||| |
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| T |
8299744 |
tcaatgatgctgatctatatctatctacctgcaaatgaaagacaacggaaggaaaacaatacataatcagtatcaatattaa------agttaccatttt |
8299837 |
T |
|
| Q |
339 |
catattatatactacaatcaatcctggtcctagatagctacataaaaaccattcaagtaatatctatacaagacatatg |
417 |
Q |
| |
|
||||||||||| |||| ||||| || ||||||||| |||| |||||||||||||| ||||||||||||||| |||||| |
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| T |
8299838 |
catattatatagtacattcaattctaatcctagataactacctaaaaaccattcaaataatatctatacaaggcatatg |
8299916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 492 - 586
Target Start/End: Original strand, 8299963 - 8300056
Alignment:
| Q |
492 |
tgaaggagctgcactacacattcacattgttttagtcatattttcagtacactatttttctatatagatccatctctaattacacccaaatgttg |
586 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||||| |
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| T |
8299963 |
tgaaggagctgcactacacattcatattgttttagtcatattttcagtacacta-ttttctagatagatccatctttaattacacacaaatgttg |
8300056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 18281791 - 18281723
Alignment:
| Q |
13 |
ttaagcaacaaaggtgttcatactttaaattgcaaactttgatgatgaaggataggcaacaagaaatag |
81 |
Q |
| |
|
|||| |||||||| | |||||||||||| || || ||||||||||||| ||| |||||||||||||||| |
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| T |
18281791 |
ttaaccaacaaagttattcatactttaatttccagactttgatgatgagggagaggcaacaagaaatag |
18281723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 27662695 - 27662813
Alignment:
| Q |
146 |
tactttaaatgccccaaaagagtttgaatttcagcattcagtcgttcaaccattgaagaaaacacacttccgtgagttctttcaccaccagactcaatga |
245 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| | || |||||||| |||||||||||||||| |
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| T |
27662695 |
tactttaaatgccccaaaagagtttgaatttcagcattcactcgttcgaccattgaagaaaccacacttgcttgtgttctttctccaccagactcaatga |
27662794 |
T |
|
| Q |
246 |
tgctaatttatatctatct |
264 |
Q |
| |
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||||||| |||| |||||| |
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| T |
27662795 |
tgctaatctatacctatct |
27662813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 313 - 394
Target Start/End: Complemental strand, 21120857 - 21120778
Alignment:
| Q |
313 |
aatattaataacaaagttacctttttcatattatatactacaatcaatcctggtcctagatagctacataaaaaccattcaa |
394 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| || |||||||||| | |||||||||| |||||||||| ||||| |
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| T |
21120857 |
aatattaataacaaagttaccattttcatat--tatagtagaatcaatcctaattctagatagctgcataaaaacccttcaa |
21120778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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