View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6998_high_4 (Length: 591)
Name: NF6998_high_4
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 587
Target Start/End: Original strand, 32944233 - 32944818
Alignment:
| Q |
1 |
cttcaaccaaatgatcattttactgttcctaatggaagttcaattataacaatcacaaaattaatgcagttactctaactccattcaattgagcacttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32944233 |
cttcaaccaaatgatcattttactgttcctaatggaagttcaattataacaatcacaaaattaatgcagttactctaactccattcaattgagcacttcc |
32944332 |
T |
|
| Q |
101 |
taactaattggaattgctcacatgacaaaaacaataacaaccaggaactatggagcacattatctgaattaactccaccttgtttataatgttgttacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32944333 |
taactaattggaattgctcacatgacaaaaacaataacaaccaggaactatggagcacattatctgaattaactccaccttgtttataatgttgttacat |
32944432 |
T |
|
| Q |
201 |
ccaattaaaaagtggatcactatagtgctactcttttggttgattaagggtcccttcaaaacttatgatccctcacctcatgttccataattcnnnnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32944433 |
ccaattaaaaagtggatcactatagtgctactcttttggttgattaagggtcccttcaaaacttatgatccctcacctcatgttccataattcttttttt |
32944532 |
T |
|
| Q |
301 |
ngagattcttcttcattc---ataggtcaatagcaaacacaattattggttgtattagtactgtaaagtggctttataatttcacacccataactctttt |
397 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32944533 |
tgagattcttcttcattcaaaataggtcaatagcaaacacaattattggttgtattagtactgtaaagtggctttataatttcacacccataactctttt |
32944632 |
T |
|
| Q |
398 |
tatcttactcagaaactcagtacatttcttttggttgagaaattaaaaacttatggtacgttaataacgccagaaacaaataaagttgatgtatatacac |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32944633 |
tatcttactcagaaactcagtacatttcttttggttgaga----aaaaacttatggtacgttaataacgccagaaacaaataaagttgatgtatatacac |
32944728 |
T |
|
| Q |
498 |
aaccagaaaagggcttataagtgggctctatatttcagcagattcctttcccattactttatataaattaaatgtgatgtccatctcatt |
587 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32944729 |
aaccagaaaaaggcttataagtgggctctatatttcagcagattcctttcccattactttatataaattaaatgtgatgtgaatctcatt |
32944818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University