View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_high_5 (Length: 572)
Name: NF6998_high_5
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Complemental strand, 30666984 - 30666464
Alignment:
| Q |
1 |
aggaaagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgagttcttatgagtaccttagtactggacttaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666984 |
aggaaagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgagttcttatgagtaccttagtactggacttaaa |
30666885 |
T |
|
| Q |
101 |
cagtgagtgacttgctacgcaatttgttaattcaaaaccaaatactcgtaatttgctcatgattttattactatggtttgtaaatgaagtttcttttgat |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666884 |
cagtgagtgacttgctacgcattttgttaattcaaaaccaaatactcgtaatttgctcatgattttattactatggtttgtaaatgaagtttcttttgat |
30666785 |
T |
|
| Q |
201 |
ctaacttgtgatgatggtgttttaggtacaactttgacaacactatggatggattttacattgctcctgcttttatggacaagcttgttgttcacatcac |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666784 |
ctaacctgtgatgatggtgttttaggtacaactttgacaacactatggatggattttacattgctcctgcttttatggacaagcttgttgttcacatcac |
30666685 |
T |
|
| Q |
301 |
caagaatttcttgaccctaccaaacatcaaggtatgtaaatttgacacatgattcctctataaactatgctatgactttagcagaattgagatacatatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666684 |
caagaatttcttgaccctaccaaacatcaaggtatgtaaatttgacacatgattcctctataaactatgctatgactttagcagaattgagatacatatt |
30666585 |
T |
|
| Q |
401 |
caatattttcatttttgtttttataggttccactcattcttggagtctggggaggaaaaggacagggaaaatctttccaagctgagcttgtctttgctaa |
500 |
Q |
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| T |
30666584 |
caatattttcatttttgtttttataggttccactcattcttggagtctggggaggaaaaggacagggaaaatctttccaagctgagcttgtctttgctaa |
30666485 |
T |
|
| Q |
501 |
gatgggaatcaagtgagttct |
521 |
Q |
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| T |
30666484 |
gatgggaatcaagtgagttct |
30666464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 34437052 - 34436947
Alignment:
| Q |
5 |
aagggtatggttgattcagttttccaagcaccacaagatactggaactcattatgcagtcatgagttcttatgagtaccttagtactggacttaaacagt |
104 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
34437052 |
aagggtatggttgatacagttttccaagcaccacaagattctggaactcattatgcagtcatgagttcttatgagtacattagtactggacttagacagt |
34436953 |
T |
|
| Q |
105 |
gagtga |
110 |
Q |
| |
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||||| |
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| T |
34436952 |
aagtga |
34436947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 211 - 339
Target Start/End: Complemental strand, 34436585 - 34436457
Alignment:
| Q |
211 |
atgatggtgttttaggtacaactttgacaacactatggatggattttacattgctcctgcttttatggacaagcttgttgttcacatcaccaagaatttc |
310 |
Q |
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|||||||| ||| ||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||| |
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| T |
34436585 |
atgatggtatttcaggtacaaccttgacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgtacacatcactaagaacttc |
34436486 |
T |
|
| Q |
311 |
ttgaccctaccaaacatcaaggtatgtaa |
339 |
Q |
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||||| || || || |||||||||||||| |
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| T |
34436485 |
ttgactctgcctaatatcaaggtatgtaa |
34436457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 425 - 519
Target Start/End: Complemental strand, 34436240 - 34436146
Alignment:
| Q |
425 |
aggttccactcattcttggagtctggggaggaaaaggacagggaaaatctttccaagctgagcttgtctttgctaagatgggaatcaagtgagtt |
519 |
Q |
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||||||| ||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
34436240 |
aggttcctctcattcttggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaagatgggcatcaagtaagtt |
34436146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 306
Target Start/End: Complemental strand, 6854189 - 6854143
Alignment:
| Q |
260 |
attgctcctgcttttatggacaagcttgttgttcacatcaccaagaa |
306 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
6854189 |
attgcacctgcatttatggacaagcttgttgttcacatcactaagaa |
6854143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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