View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_high_9 (Length: 269)
Name: NF6998_high_9
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 29874520 - 29874284
Alignment:
| Q |
18 |
ctaatatcattaatgttataagttaaattggaatcggggactatatagttagcaaataaattaataagactaacatcagcatgaatgtatatagccgtat |
117 |
Q |
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| T |
29874520 |
ctaatatcattaatgttataagttaaattgggatcggggtctatatagttagcaaataaattaataatactaacatcaacatgaatgtatatagccgtat |
29874421 |
T |
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| Q |
118 |
caaaatactgattctggtccataacttcataggtacgtttaccgtggacattccattgcttgtacagaaagtcaaagttgtccccgagcatattcggcca |
217 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| |
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| T |
29874420 |
caaaatactgactctggttcataacttcataggtacgtttaccgtggacattccattgcttgtactaaaagtcaaagttgtccccaagcatattcagcca |
29874321 |
T |
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| Q |
218 |
agcgtccttcagataccgatatctcaaattacactgt |
254 |
Q |
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|||||| |||| ||||||||||||||||||||||||| |
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| T |
29874320 |
agcgtcattcaaataccgatatctcaaattacactgt |
29874284 |
T |
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