View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6998_low_15 (Length: 234)

Name: NF6998_low_15
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6998_low_15
NF6998_low_15
[»] chr4 (24 HSPs)
chr4 (4-141)||(28703197-28703334)
chr4 (174-234)||(28703431-28703491)
chr4 (4-48)||(6789430-6789474)
chr4 (4-46)||(29908069-29908111)
chr4 (4-49)||(2649736-2649781)
chr4 (4-45)||(4059243-4059284)
chr4 (4-49)||(49473658-49473703)
chr4 (4-48)||(46676502-46676546)
chr4 (4-51)||(1432869-1432916)
chr4 (162-193)||(28703349-28703380)
chr4 (4-46)||(7230293-7230335)
chr4 (4-38)||(11166699-11166733)
chr4 (4-46)||(14577513-14577555)
chr4 (4-50)||(30380543-30380589)
chr4 (4-50)||(33900726-33900772)
chr4 (4-42)||(56204960-56204998)
chr4 (6-52)||(56497608-56497654)
chr4 (4-49)||(15988430-15988475)
chr4 (4-49)||(19908705-19908750)
chr4 (4-49)||(21991250-21991295)
chr4 (4-49)||(38470190-38470235)
chr4 (4-52)||(18915046-18915094)
chr4 (4-52)||(49949347-49949394)
chr4 (4-40)||(56551604-56551640)
[»] chr7 (15 HSPs)
chr7 (4-52)||(41029285-41029333)
chr7 (4-52)||(48527203-48527251)
chr7 (4-51)||(2618692-2618739)
chr7 (4-46)||(27544970-27545012)
chr7 (4-49)||(46987099-46987144)
chr7 (4-46)||(18714461-18714503)
chr7 (4-38)||(30296346-30296380)
chr7 (4-49)||(7872751-7872796)
chr7 (4-49)||(27263354-27263399)
chr7 (4-49)||(27270248-27270293)
chr7 (4-49)||(33610928-33610973)
chr7 (5-46)||(40867044-40867085)
chr7 (4-40)||(8615036-8615072)
chr7 (10-58)||(26946619-26946667)
chr7 (4-52)||(37624556-37624604)
[»] chr2 (16 HSPs)
chr2 (5-51)||(4056804-4056850)
chr2 (4-49)||(12124697-12124742)
chr2 (6-49)||(5137808-5137851)
chr2 (4-58)||(24593389-24593443)
chr2 (4-49)||(12124558-12124603)
chr2 (4-52)||(4693095-4693143)
chr2 (6-40)||(4138006-4138040)
chr2 (6-52)||(20455906-20455952)
chr2 (4-41)||(21482530-21482567)
chr2 (4-49)||(33063999-33064044)
chr2 (4-45)||(34977217-34977258)
chr2 (4-52)||(6579281-6579329)
chr2 (6-46)||(7772466-7772506)
chr2 (4-52)||(10156030-10156078)
chr2 (4-52)||(20120721-20120769)
chr2 (1-45)||(38835247-38835291)
[»] chr8 (15 HSPs)
chr8 (4-53)||(19778078-19778127)
chr8 (4-51)||(6447202-6447249)
chr8 (7-49)||(44068564-44068606)
chr8 (4-41)||(7968951-7968988)
chr8 (4-49)||(9070971-9071016)
chr8 (6-51)||(15438468-15438513)
chr8 (6-51)||(15529772-15529817)
chr8 (4-49)||(27750907-27750952)
chr8 (4-49)||(30623306-30623351)
chr8 (4-49)||(38282842-38282887)
chr8 (4-49)||(44019562-44019607)
chr8 (8-49)||(44602614-44602655)
chr8 (4-52)||(4830021-4830069)
chr8 (1-37)||(11963419-11963455)
chr8 (4-40)||(42208481-42208517)
[»] scaffold0026 (1 HSPs)
scaffold0026 (4-52)||(75338-75386)
[»] chr1 (19 HSPs)
chr1 (4-52)||(38448866-38448914)
chr1 (6-49)||(9639820-9639863)
chr1 (4-52)||(16580799-16580847)
chr1 (4-52)||(32560986-32561034)
chr1 (7-51)||(40613039-40613083)
chr1 (4-52)||(47719107-47719155)
chr1 (4-52)||(50638916-50638964)
chr1 (6-49)||(45481508-45481551)
chr1 (4-38)||(7574132-7574166)
chr1 (4-49)||(10132447-10132492)
chr1 (4-49)||(17283964-17284009)
chr1 (4-49)||(29987115-29987160)
chr1 (4-49)||(30937488-30937533)
chr1 (4-52)||(10843321-10843369)
chr1 (1-49)||(17221523-17221571)
chr1 (5-37)||(20481585-20481617)
chr1 (4-52)||(23405358-23405406)
chr1 (4-52)||(31890749-31890797)
chr1 (4-40)||(44507942-44507978)
[»] chr5 (12 HSPs)
chr5 (4-49)||(8544992-8545037)
chr5 (4-53)||(34702503-34702552)
chr5 (4-49)||(42168948-42168993)
chr5 (4-43)||(36762872-36762911)
chr5 (4-50)||(16531277-16531323)
chr5 (4-53)||(11647210-11647259)
chr5 (4-49)||(26376979-26377024)
chr5 (4-49)||(37932343-37932388)
chr5 (4-52)||(3445247-3445295)
chr5 (4-52)||(16752502-16752550)
chr5 (4-52)||(18278259-18278307)
chr5 (9-49)||(32806377-32806417)
[»] chr3 (20 HSPs)
chr3 (4-53)||(977940-977989)
chr3 (4-47)||(28266729-28266772)
chr3 (4-39)||(33771703-33771738)
chr3 (4-49)||(13042803-13042848)
chr3 (4-49)||(13050880-13050925)
chr3 (4-49)||(14741807-14741852)
chr3 (4-49)||(35191820-35191865)
chr3 (4-49)||(46483260-46483305)
chr3 (4-37)||(46749151-46749184)
chr3 (4-49)||(52119389-52119434)
chr3 (4-52)||(8113562-8113610)
chr3 (4-52)||(17588375-17588423)
chr3 (4-52)||(19468464-19468512)
chr3 (4-52)||(21513301-21513349)
chr3 (5-49)||(25902794-25902838)
chr3 (4-52)||(27143059-27143107)
chr3 (4-48)||(39822176-39822220)
chr3 (4-52)||(48315024-48315072)
chr3 (4-36)||(51250249-51250281)
chr3 (4-52)||(53996312-53996360)
[»] chr6 (10 HSPs)
chr6 (4-52)||(30358294-30358342)
chr6 (4-46)||(788879-788921)
chr6 (4-46)||(28898869-28898911)
chr6 (5-38)||(1130799-1130832)
chr6 (4-49)||(2726420-2726465)
chr6 (4-53)||(6160668-6160716)
chr6 (4-49)||(21936036-21936081)
chr6 (4-37)||(28757039-28757072)
chr6 (6-38)||(21072543-21072575)
chr6 (4-40)||(31971542-31971578)
[»] scaffold0117 (1 HSPs)
scaffold0117 (4-50)||(18306-18352)
[»] scaffold0005 (1 HSPs)
scaffold0005 (4-46)||(239820-239862)
[»] scaffold0238 (1 HSPs)
scaffold0238 (4-49)||(25402-25447)
[»] scaffold0126 (1 HSPs)
scaffold0126 (4-49)||(34891-34936)
[»] scaffold0262 (1 HSPs)
scaffold0262 (6-38)||(15944-15976)
[»] scaffold0040 (1 HSPs)
scaffold0040 (4-52)||(53777-53825)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 28703197 - 28703334
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcctcaacattaccnnnnnnngaaagaaaatgagattgctcgatggttaaataa 103  Q
    ||||||||| ||||||| |||||||||| ||||| |||  ||||||||||  ||||||||       ||||||||||||||||||| |||||||||||||    
T  28703197 agttggtaaagacaatgcatagtatatgtaaggttcgggattcgaatcctggacattaccaaaaaaagaaagaaaatgagattgcttgatggttaaataa 28703296  T
Q  104 tagaaaatggttggtgaaagaaagaagatggaagaaga 141  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  28703297 tagaaaatggttggtgaaagaaagaaggtggaagaaga 28703334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 28703431 - 28703491
Alignment:
Q  174 aagttgatggactagatttgatgtggatgggctaaaataagatttggtgagatgatcaatc 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28703431 aagttgatggactagatttgatgtggatgggctaaaataagatttggtgagatgatcaatc 28703491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 6789474 - 6789430
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcga 48  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  6789474 agttggtaaggacaatgcatagtatatgcaaggtccggggttcga 6789430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 29908069 - 29908111
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  29908069 agttggtaaggacaatgcataatatatgcaaggtccggagttc 29908111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 2649781 - 2649736
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||||    
T  2649781 agttggtagggacaatgcataatatatgcaaggtccggagttcgaa 2649736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 4059284 - 4059243
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagtt 45  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  4059284 agttgggaaggacaatgtataatatatgcaaggtccggagtt 4059243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 49473658 - 49473703
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||    
T  49473658 agttggtaaggacaatgcataatatatgcaaggtccggggttcgaa 49473703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 46676546 - 46676502
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcga 48  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||    
T  46676546 agttggtaaggacaatgcataatatatgcaaggtccggggttcga 46676502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 1432869 - 1432916
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatc 51  Q
    |||||||||| ||| |||||| |||||||||||||||| |||||||||    
T  1432869 agttggtaagaacagtgtataatatatgcaaggtccggggttcgaatc 1432916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 193
Target Start/End: Original strand, 28703349 - 28703380
Alignment:
Q  162 caatgaaagataaagttgatggactagatttg 193  Q
    ||||||||||||||||||||||||||||||||    
T  28703349 caatgaaagataaagttgatggactagatttg 28703380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 7230293 - 7230335
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||    
T  7230293 agttggtaaggacaatgcataatatatgcaaggtccggggttc 7230335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 11166699 - 11166733
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtc 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  11166699 agttggtaaggacaatgtataatatatgcaaggtc 11166733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 14577555 - 14577513
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    ||||||||||||||||| ||| ||||||||| |||||||||||    
T  14577555 agttggtaaggacaatgcataatatatgcaaagtccggagttc 14577513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 30380543 - 30380589
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaat 50  Q
    ||||||||||||||||||||| ||||||||||||  || ||||||||    
T  30380543 agttggtaaggacaatgtataatatatgcaaggtttggggttcgaat 30380589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 33900772 - 33900726
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaat 50  Q
    ||||||||||||||||| ||| |||||||||| || |||||||||||    
T  33900772 agttggtaaggacaatgcataatatatgcaagatctggagttcgaat 33900726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 56204960 - 56204998
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccgga 42  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  56204960 agttggtaaggacaatgcataatatatgcaaggtccgga 56204998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 56497654 - 56497608
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||| ||| ||||||||||||| || ||||||||||    
T  56497654 ttggtaaggacaatgcataatatatgcaaggtctggggttcgaatcc 56497608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 15988430 - 15988475
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| ||||| |||||||||| |||||||    
T  15988430 agttggtaaggacaatgcatactatatacaaggtccggggttcgaa 15988475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 19908705 - 19908750
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| |||||||||||||||  |||||||    
T  19908705 agttggtaaggacaatgcataatatatgcaaggtccgaggttcgaa 19908750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 21991295 - 21991250
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||| |||||||| |||  |||||||||||||||||||||||    
T  21991295 agttggtatggacaatgcataaaatatgcaaggtccggagttcgaa 21991250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 38470190 - 38470235
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| | ||||||| ||||||||||||||    
T  38470190 agttggtaaggacaatgcataatgtatgcaatgtccggagttcgaa 38470235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 18915094 - 18915046
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| ||||| || ||||||| ||||||||||    
T  18915094 agttggtaaggacaatgcataatatattcatggtccggggttcgaatcc 18915046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 49949347 - 49949394
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| ||||||||||||| || ||||||||||    
T  49949347 agttggtaaggacaatgcataatatatgcaaggtctgg-gttcgaatcc 49949394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 56551640 - 56551604
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccg 40  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  56551640 agttggtaaggacaatgcataatatatgcaaggtccg 56551604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 41029285 - 41029333
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  41029285 agttggtaaggacaatgtataatatatgcaaggtccggggttcgaatcc 41029333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 48527203 - 48527251
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||||||||    
T  48527203 agttgataaggacaatgcataatatatgcaaggtccggagttcgaatcc 48527251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 2618692 - 2618739
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatc 51  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||    
T  2618692 agttggtaaggacaatgcataatatatgcaaggtccggggttcgaatc 2618739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 27544970 - 27545012
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  27544970 agttggtaaggacaatgtataatatatgcaaggtccggggttc 27545012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 46987099 - 46987144
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||    
T  46987099 agttggtaaggacaatgcataatatatgcaaggtccggggttcgaa 46987144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 18714461 - 18714503
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||    
T  18714461 agttggtaaggacaatgcataatatatgcaaggtccggggttc 18714503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 30296346 - 30296380
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtc 38  Q
    ||||||||||||||||||||| |||||||||||||    
T  30296346 agttggtaaggacaatgtataatatatgcaaggtc 30296380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 7872796 - 7872751
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| ||||||||||||| || |||||||    
T  7872796 agttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 7872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 27263354 - 27263399
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||| |||||||| ||| |||||||||||| |||||||||||    
T  27263354 agttggtatggacaatgcataatatatgcaaggttcggagttcgaa 27263399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 27270248 - 27270293
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||| |||||||| ||| |||||||||||| |||||||||||    
T  27270248 agttggtatggacaatgcataatatatgcaaggttcggagttcgaa 27270293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 33610973 - 33610928
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||| || |||||||| ||| ||||||||||||||||||||||||    
T  33610973 agttgttacggacaatgcataatatatgcaaggtccggagttcgaa 33610928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 40867044 - 40867085
Alignment:
Q  5 gttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    |||||||| ||||||| |||||||||||||||||||| ||||    
T  40867044 gttggtaaagacaatgcatagtatatgcaaggtccggggttc 40867085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 8615036 - 8615072
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccg 40  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  8615036 agttggtaaggacaatgcataatatatgcaaggtccg 8615072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 26946667 - 26946619
Alignment:
Q  10 taaggacaatgtatagtatatgcaaggtccggagttcgaatcctcaaca 58  Q
    ||||||||||| ||||||||||||||||  || ||||||||||| ||||    
T  26946667 taaggacaatgcatagtatatgcaaggtttggtgttcgaatcctgaaca 26946619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 37624556 - 37624604
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||| |||||||| ||| ||||||||||||| || ||||||||||    
T  37624556 agttggtatggacaatgcataatatatgcaaggtcgggggttcgaatcc 37624604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 4056804 - 4056850
Alignment:
Q  5 gttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatc 51  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  4056804 gttggtaaggacaatgcataatatatgcaaggtccggagttcgaatc 4056850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 12124697 - 12124742
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  12124697 agttggtaaggacaatgcataatatatgcaaggtccggagttcgaa 12124742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 5137851 - 5137808
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    
T  5137851 ttggtaaggacaatgtataatatatgcaaggtccggggttcgaa 5137808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 24593389 - 24593443
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcctcaaca 58  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||| ||| ||||    
T  24593389 agttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccctgaaca 24593443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 12124558 - 12124603
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||    
T  12124558 agttggtaaggacaatgcataatatatgcaaggtccggggttcgaa 12124603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 4693095 - 4693143
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||||||    
T  4693095 agttgataaggacaatatataatacatgcaaggtccggagttcgaatcc 4693143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 4138006 - 4138040
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtccg 40  Q
    ||||||||||||||||||| |||||||||||||||    
T  4138006 ttggtaaggacaatgtataatatatgcaaggtccg 4138040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 20455906 - 20455952
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||| |||||||| ||| |||||||||||||||| ||||||||||    
T  20455906 ttggtatggacaatgcataatatatgcaaggtccggggttcgaatcc 20455952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 21482567 - 21482530
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccgg 41  Q
    |||||||||||| |||||||| ||||||||||||||||    
T  21482567 agttggtaaggataatgtataatatatgcaaggtccgg 21482530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 33063999 - 33064044
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||| || |||||||| ||| ||||||||||||||||||||||||    
T  33063999 agttgatatggacaatgcataatatatgcaaggtccggagttcgaa 33064044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 34977217 - 34977258
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagtt 45  Q
    |||||||| |||||||| ||| ||||||||||||||||||||    
T  34977217 agttggtatggacaatgcataatatatgcaaggtccggagtt 34977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 6579329 - 6579281
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||||| |||||| ||| ||||||||||||| || ||||||||||    
T  6579329 agttggtaagaacaatgcataatatatgcaaggtctggggttcgaatcc 6579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 7772506 - 7772466
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    |||||||||| |||| ||| |||||||||||||||||||||    
T  7772506 ttggtaaggataatgcataatatatgcaaggtccggagttc 7772466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 10156030 - 10156078
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||  ||| |||||||||||| ||| ||||||||||    
T  10156030 agttggtaaggacaatacataatatatgcaaggttcggtgttcgaatcc 10156078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 20120769 - 20120721
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| |||||||||||| ||| |||| |||||    
T  20120769 agttggtaaggacaatgcataatatatgcaaggttcggggttcaaatcc 20120721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38835291 - 38835247
Alignment:
Q  1 ctaagttggtaaggacaatgtatagtatatgcaaggtccggagtt 45  Q
    |||||||||||||||||||| ||| ||||||||| ||| ||||||    
T  38835291 ctaagttggtaaggacaatgcataatatatgcaaagtcaggagtt 38835247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 19778078 - 19778127
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcct 53  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  19778078 agttggtaaggacaatgcataatatatgcaaggtccggggttcgaatcct 19778127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 6447202 - 6447249
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatc 51  Q
    |||||||| |||||||| ||| ||||||||||||||||||||| ||||    
T  6447202 agttggtatggacaatgcataatatatgcaaggtccggagttcaaatc 6447249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 44068564 - 44068606
Alignment:
Q  7 tggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||    
T  44068564 tggtaaggacaatatataatatatgcaaggtcgggagttcgaa 44068606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 7968988 - 7968951
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccgg 41  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  7968988 agttggtaaggacaatgcataatatatgcaaggtccgg 7968951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 9070971 - 9071016
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||||||| |||||| ||||||||  |||||||    
T  9070971 agttggtaaggacaatgtataatatatgtaaggtccgaggttcgaa 9071016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 15438468 - 15438513
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatc 51  Q
    ||||||||||||||| ||| |||||||||||||||| ||| |||||    
T  15438468 ttggtaaggacaatgcataatatatgcaaggtccggggtttgaatc 15438513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 15529772 - 15529817
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatc 51  Q
    ||||||||||||||| ||| |||||||||||||||| ||| |||||    
T  15529772 ttggtaaggacaatgcataatatatgcaaggtccggggtttgaatc 15529817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 27750952 - 27750907
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||||||||| || ||| |||||||||||||||| |||||||    
T  27750952 agttggtaaggacagtgcataatatatgcaaggtccggggttcgaa 27750907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 30623306 - 30623351
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| ||||||||||||| || |||||||    
T  30623306 agttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 30623351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 38282887 - 38282842
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||||||||| |||||||||  |||||||    
T  38282887 agttggtaaggacaatgcatagtatatacaaggtccgaggttcgaa 38282842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 44019562 - 44019607
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||||| |||||| ||| ||||||||||||||| ||||||||    
T  44019562 agttggtaagaacaatgcataatatatgcaaggtccgaagttcgaa 44019607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 44602614 - 44602655
Alignment:
Q  8 ggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||| |||||||| ||| ||||||||||||||||||||||||    
T  44602614 ggtatggacaatgcataatatatgcaaggtccggagttcgaa 44602655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 4830021 - 4830069
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||| |||||||| ||| |||||||||||| ||| ||||||||||    
T  4830021 agttggtatggacaatgcataatatatgcaaggttcggggttcgaatcc 4830069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11963455 - 11963419
Alignment:
Q  1 ctaagttggtaaggacaatgtatagtatatgcaaggt 37  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  11963455 ctaagttggtaaagacaatgcatagtatatgcaaggt 11963419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 42208517 - 42208481
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccg 40  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  42208517 agttggtaaggacaatgcataatatatgcaaggtccg 42208481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 75338 - 75386
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  75338 agttggtaaggacaatgcataatatatgcaaggtccggggttcgaatcc 75386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 38448914 - 38448866
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| |||||||||||||||| ||||||||||    
T  38448914 agttggtaaggacaatgcataatatatgcaaggtccggggttcgaatcc 38448866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 9639863 - 9639820
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  9639863 ttggtaaggacaatgcataatatatgcaaggtccggagttcgaa 9639820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 16580847 - 16580799
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||| |||||||||||| ||||||||||||| || ||||||||||    
T  16580847 agttggtatggacaatgtataatatatgcaaggtctggggttcgaatcc 16580799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 32560986 - 32561034
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||| |||||||||||| |||||||||||||||| |||| |||||    
T  32560986 agttggtatggacaatgtataatatatgcaaggtccggggttcaaatcc 32561034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 40613039 - 40613083
Alignment:
Q  7 tggtaaggacaatgtatagtatatgcaaggtccggagttcgaatc 51  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||    
T  40613039 tggtaaggacaatgcataatatatgcaaggtccggggttcgaatc 40613083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 47719155 - 47719107
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||||||| |||| ||| |||||||||||| ||||||||||||||    
T  47719155 agttggtaaggataatgcataatatatgcaaggttcggagttcgaatcc 47719107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 50638964 - 50638916
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| |||||||||||||| | ||||||||||    
T  50638964 agttggtaaggacaatgcataatatatgcaaggtccagggttcgaatcc 50638916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 45481508 - 45481551
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||    
T  45481508 ttggtaaggacaatgcataatatatgcaaggtccggggttcgaa 45481551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 7574166 - 7574132
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtc 38  Q
    ||||||||||||||||| |||||||||||||||||    
T  7574166 agttggtaaggacaatgcatagtatatgcaaggtc 7574132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 10132492 - 10132447
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| ||||||||||||| || |||||||    
T  10132492 agttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 10132447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 17283964 - 17284009
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| |||||||||||||| | |||||||    
T  17283964 agttggtaaggacaatgcataatatatgcaaggtccagggttcgaa 17284009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 29987160 - 29987115
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||| |||||||||| ||| ||||||||||||| ||||||||||    
T  29987160 agttggcaaggacaatgcataatatatgcaaggtctggagttcgaa 29987115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 30937488 - 30937533
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||| ||||||||||||||| ||||||||||||| || |||||||    
T  30937488 agttgataaggacaatgtataatatatgcaaggtctggggttcgaa 30937533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 10843369 - 10843321
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||| |||||| |||| ||| ||||||||||||||||| |||||||||    
T  10843369 agttgataaggataatgcataatatatgcaaggtccggaattcgaatcc 10843321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 17221571 - 17221523
Alignment:
Q  1 ctaagttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||| |||||| ||| |||||||||||||||  |||||||    
T  17221571 ctaagttggtaagaacaatgcataatatatgcaaggtccgaggttcgaa 17221523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 20481617 - 20481585
Alignment:
Q  5 gttggtaaggacaatgtatagtatatgcaaggt 37  Q
    |||||||||||||||||||| ||||||||||||    
T  20481617 gttggtaaggacaatgtataatatatgcaaggt 20481585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 23405406 - 23405358
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||| ||||||||||| ||| |||||||||||||| | ||||||||||    
T  23405406 agttgttaaggacaatgcataatatatgcaaggtccagggttcgaatcc 23405358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 31890797 - 31890749
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| ||||||| |||||||||| || |||||    
T  31890797 agttggtaaggacaatgcataatatatgcgaggtccggaggtcaaatcc 31890749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 44507978 - 44507942
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccg 40  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  44507978 agttggttaggacaatgtataatatatgcaaggtccg 44507942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 8545037 - 8544992
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  8545037 agttgataaggacaatgcataatatatgcaaggtccggagttcgaa 8544992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 34702503 - 34702552
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcct 53  Q
    ||||||||||||||||| ||| |||||| ||||||||| |||||||||||    
T  34702503 agttggtaaggacaatgcataatatatgaaaggtccggggttcgaatcct 34702552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 42168993 - 42168948
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||    
T  42168993 agttggtaaggacaatgcatagtatatgcaaggtctggggttcgaa 42168948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 36762911 - 36762872
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggag 43  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  36762911 agttggtaaggacaatgtataatgtatgcaaggtccggag 36762872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 16531323 - 16531277
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaat 50  Q
    ||||||||||||||||| ||| ||||||||||||||  |||||||||    
T  16531323 agttggtaaggacaatgcataatatatgcaaggtccatagttcgaat 16531277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 11647210 - 11647259
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcct 53  Q
    ||||||||||||||||| ||| ||||||||||||  || |||||||||||    
T  11647210 agttggtaaggacaatgcataatatatgcaaggtttggggttcgaatcct 11647259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 26376979 - 26377024
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| ||||||||| |||||| |||||||    
T  26376979 agttggtaaggacaatgcatattatatgcaacgtccggggttcgaa 26377024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 37932343 - 37932388
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||| |||||||| ||| |||||||||||||||| |||||||    
T  37932343 agttggtatggacaatgcataatatatgcaaggtccggggttcgaa 37932388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 3445295 - 3445247
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| | |||||||||||||| |||| |||||    
T  3445295 agttggtaaggacaatgcataatgtatgcaaggtccggggttcaaatcc 3445247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 16752550 - 16752502
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| |||||||||| | ||| ||||||||||    
T  16752550 agttggtaaggacaatgcataatatatgcaagattcggggttcgaatcc 16752502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 18278307 - 18278259
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||||| |||||| ||| ||||||||||||||| | |||||||||    
T  18278307 agttggtaagaacaatgcataatatatgcaaggtccgaaattcgaatcc 18278259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 32806377 - 32806417
Alignment:
Q  9 gtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||||||| ||| ||||||||||||||| ||||||||    
T  32806377 gtaaggacaatgcataatatatgcaaggtccgaagttcgaa 32806417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 977989 - 977940
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcct 53  Q
    |||||||| |||||||| ||| ||||||||||||||||||||| ||||||    
T  977989 agttggtatggacaatgcataatatatgcaaggtccggagttcaaatcct 977940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 28266729 - 28266772
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcg 47  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||    
T  28266729 agttggtaaggacaatgcataatatatgcaaggtccggggttcg 28266772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 33771703 - 33771738
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtcc 39  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33771703 agttggtaaggacaatgtataatatatgcaaggtcc 33771738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 13042848 - 13042803
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||| |||||| |||| |||||||||||||||| |||||||    
T  13042848 agttggtaaagacaatttataatatatgcaaggtccggggttcgaa 13042803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 13050925 - 13050880
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||| |||||| |||| |||||||||||||||| |||||||    
T  13050925 agttggtaaagacaatttataatatatgcaaggtccggggttcgaa 13050880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 14741807 - 14741852
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| ||||||||||||  ||||||||||    
T  14741807 agttggtaaggacaatgcataatatatgcaaggtttggagttcgaa 14741852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 35191865 - 35191820
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| ||||||||||||| || |||||||    
T  35191865 agttggtaaggacaatgcataatatatgcaaggtctggggttcgaa 35191820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 46483260 - 46483305
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||| |||||||| ||| ||||||||| ||||||||||||||    
T  46483260 agttggtatggacaatgcataatatatgcaaagtccggagttcgaa 46483305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 46749151 - 46749184
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggt 37  Q
    ||||||||||||||||||||||||| ||||||||    
T  46749151 agttggtaaggacaatgtatagtatctgcaaggt 46749184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 52119389 - 52119434
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| |||||||||||| ||| |||||||    
T  52119389 agttggtaaggacaatgcataatatatgcaaggttcggggttcgaa 52119434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 8113610 - 8113562
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| |||||||||| ||||  ||||||||||    
T  8113610 agttggtaaggacaatgcataatatatgcaagatccgcggttcgaatcc 8113562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 17588375 - 17588423
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| |||||||||| || || ||||||||||    
T  17588375 agttggtaaggacaatgcataatatatgcaagatctggggttcgaatcc 17588423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 19468464 - 19468512
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||| |||||||| ||| |||||||||||||||  ||||||||||    
T  19468464 agttggtatggacaatgcataatatatgcaaggtccgtggttcgaatcc 19468512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 21513301 - 21513349
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||| ||| | ||||||||||| || ||||||||||    
T  21513301 agttggtaaggacaatgcataatttatgcaaggtctggggttcgaatcc 21513349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 25902794 - 25902838
Alignment:
Q  5 gttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||| |||||||| ||||||||||||| || |||||||    
T  25902794 gttggtaaggataatgtataatatatgcaaggtctggggttcgaa 25902838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 27143059 - 27143107
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    ||||||||||||||||||||| |||||| ||||||  | ||||||||||    
T  27143059 agttggtaaggacaatgtataatatatgtaaggtctagggttcgaatcc 27143107  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 39822220 - 39822176
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcga 48  Q
    ||||||||||||||||| ||| ||||| |||||||||| ||||||    
T  39822220 agttggtaaggacaatgcataatatatacaaggtccggggttcga 39822176  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 48315072 - 48315024
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||||||| |||| ||| |||||||||||||||| |||| |||||    
T  48315072 agttggtaaggataatgcataatatatgcaaggtccggggttcaaatcc 48315024  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 51250281 - 51250249
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaagg 36  Q
    ||||||||||||||||||||| |||||||||||    
T  51250281 agttggtaaggacaatgtataatatatgcaagg 51250249  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 53996312 - 53996360
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||| |||||||| ||| ||||||||||||| || ||||||||||    
T  53996312 agttggtatggacaatgcataatatatgcaaggtctggggttcgaatcc 53996360  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 30358342 - 30358294
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||||||| |||||||| | ||||||| |||||||||||||||||    
T  30358342 agttggtaaggaaaatgtataatgtatgcaaagtccggagttcgaatcc 30358294  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 788879 - 788921
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    ||||||||||||||||| ||| |||||||||||| ||||||||    
T  788879 agttggtaaggacaatgcataatatatgcaaggttcggagttc 788921  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 28898869 - 28898911
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||    
T  28898869 agttggtaaggacaatgcataatatatgaaaggtccggagttc 28898911  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 1130799 - 1130832
Alignment:
Q  5 gttggtaaggacaatgtatagtatatgcaaggtc 38  Q
    ||||||| ||||||||||||||||||||||||||    
T  1130799 gttggtagggacaatgtatagtatatgcaaggtc 1130832  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 2726465 - 2726420
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||| |||||||| ||| |||||||||||||||| |||||||    
T  2726465 agttggtatggacaatgcataatatatgcaaggtccggggttcgaa 2726420  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 6160716 - 6160668
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcct 53  Q
    |||||||| |||||||||||| ||||||||||||  ||||||||||||||    
T  6160716 agttggtatggacaatgtataatatatgcaaggt-tggagttcgaatcct 6160668  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 21936081 - 21936036
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    |||||||||| |||||  ||| ||||||||||||||||||||||||    
T  21936081 agttggtaagaacaattcataatatatgcaaggtccggagttcgaa 21936036  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 28757072 - 28757039
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggt 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  28757072 agttggtaaggacaatgtataatatatgcaaggt 28757039  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 21072543 - 21072575
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtc 38  Q
    ||||||||||||||| |||||||||||||||||    
T  21072543 ttggtaaggacaatgcatagtatatgcaaggtc 21072575  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 31971542 - 31971578
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccg 40  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  31971542 agttggtaaggacaatgcataatatatgcaaggtccg 31971578  T

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Target: scaffold0117 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 18306 - 18352
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaat 50  Q
    ||||||||||||||||||||| |||||||||| ||| | ||||||||    
T  18306 agttggtaaggacaatgtataatatatgcaagatccagggttcgaat 18352  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 239820 - 239862
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttc 46  Q
    ||||||||||||||||| ||| ||||||||| |||||||||||    
T  239820 agttggtaaggacaatgcataatatatgcaaagtccggagttc 239862  T

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Target: scaffold0238 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 25402 - 25447
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| |||||||||||||| | |||||||    
T  25402 agttggtaaggacaatgcataatatatgcaaggtccagggttcgaa 25447  T

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Target: scaffold0126 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 34936 - 34891
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaa 49  Q
    ||||||||||||||||| ||| |||||||||||||| | |||||||    
T  34936 agttggtaaggacaatgcataatatatgcaaggtccagggttcgaa 34891  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 15976 - 15944
Alignment:
Q  6 ttggtaaggacaatgtatagtatatgcaaggtc 38  Q
    ||||||||||||||||||| |||||||||||||    
T  15976 ttggtaaggacaatgtataatatatgcaaggtc 15944  T

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Target: scaffold0040 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 53825 - 53777
Alignment:
Q  4 agttggtaaggacaatgtatagtatatgcaaggtccggagttcgaatcc 52  Q
    |||||||||||||| || ||| || ||||||||||||| ||||||||||    
T  53825 agttggtaaggacagtgcataatacatgcaaggtccggggttcgaatcc 53777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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