View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6998_low_16 (Length: 228)
Name: NF6998_low_16
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_low_16 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 29873934 - 29874160
Alignment:
| Q |
1 |
ttggagtccgttctattgcatttaaggtagctcttttgtaccttccgtggtaagtaggggtttcttcatgttttaatgtagttattttcttctttacaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
29873934 |
ttggagtccgttctattgcatttaaggtagctcttttgtacctttcgtggtaagtaggggttttttcatgtttcaatgtagttattttcttttttacaat |
29874033 |
T |
|
| Q |
101 |
ctaatnnnnnnnttactataaaataaaaatgttttattgaatgtttatagtcctttcaaatgtacacactcttagttacaaagtaaattttcttatagta |
200 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29874034 |
ctaataaaaaaattactataaa-taaaaatgttttattgaatggttatagtcctatcaaatgtacacactcttagttacaaagtaaattttcttatactg |
29874132 |
T |
|
| Q |
201 |
ttaatgtaaagttgataattaataatct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29874133 |
ttaatgtaaagttgataattaataatct |
29874160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 21387077 - 21387005
Alignment:
| Q |
156 |
tcaaatgtacacactcttagttacaaagtaaattttcttatagtattaatgtaaagttgataattaataatct |
228 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
21387077 |
tcaaatgtgcacattcttagttacaaagtaaattttcttgtactattaatgtaaagttgaaaattaataatct |
21387005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 156 - 226
Target Start/End: Original strand, 21386208 - 21386278
Alignment:
| Q |
156 |
tcaaatgtacacactcttagttacaaagtaaattttcttatagtattaatgtaaagttgataattaataat |
226 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
21386208 |
tcaaatgtgcacattcttaattacaaagtaaattttcttgtagtgttaatgtaaagttgataattaataat |
21386278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 21406518 - 21406572
Alignment:
| Q |
172 |
ttagttacaaagtaaattttcttatagtattaatgtaaagttgataattaataat |
226 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
21406518 |
ttagttacaaagtaaattttcttgtagtgttaatgtaaagttgataattaataat |
21406572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University