View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_low_20 (Length: 212)
Name: NF6998_low_20
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 25539075 - 25538895
Alignment:
| Q |
15 |
catagctttagaaggctgcagtaggtagtagcagttcagtttcccaacttattgattgtgggggtaccttaacttatttttcaattttataagaaaactt |
114 |
Q |
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| T |
25539075 |
catagctttagaaggctgcagtaggtagtagcagttcagtttcccaacttattgattgtgagggtaccttaacttatttttcaattttataagaaaactt |
25538976 |
T |
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| Q |
115 |
atagagttgaattcacaagatggacaaaattccattccnnnnnnngctttgctctgttccactattgaataagaaactttt |
195 |
Q |
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| T |
25538975 |
atagagttgaattcacaagatggacaaaattccattcctttttttgctttgctctgttccactattgaataagaaactttt |
25538895 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 25516700 - 25516765
Alignment:
| Q |
87 |
cttatttttcaattttataagaaaacttatagagttgaattcacaagatggacaaaattccattcc |
152 |
Q |
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| T |
25516700 |
cttatttttctatttactaagaaaacttgtaaagttgagttcactagatggactaaaatccattcc |
25516765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 44461410 - 44461361
Alignment:
| Q |
95 |
tcaattttataagaaaacttatagagttgaattcacaagatggacaaaat |
144 |
Q |
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| T |
44461410 |
tcaattttctaagaaagcttgtggagttgagttcacaagatggacaaaat |
44461361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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