View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6998_low_6 (Length: 569)

Name: NF6998_low_6
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6998_low_6
NF6998_low_6
[»] chr7 (3 HSPs)
chr7 (16-569)||(43497276-43497872)
chr7 (16-84)||(44533672-44533740)
chr7 (16-49)||(33431047-33431080)
[»] chr1 (4 HSPs)
chr1 (16-71)||(33459121-33459176)
chr1 (16-71)||(17282055-17282110)
chr1 (16-71)||(51536581-51536636)
chr1 (16-49)||(37843670-37843703)
[»] chr6 (3 HSPs)
chr6 (16-49)||(8394651-8394684)
chr6 (16-71)||(9515528-9515583)
chr6 (16-45)||(8407004-8407033)
[»] chr5 (3 HSPs)
chr5 (16-49)||(4914946-4914979)
chr5 (18-62)||(13633780-13633824)
chr5 (18-62)||(25876294-25876338)
[»] chr4 (1 HSPs)
chr4 (16-63)||(24559559-24559606)
[»] chr3 (1 HSPs)
chr3 (17-49)||(11471871-11471903)


Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 16 - 569
Target Start/End: Original strand, 43497276 - 43497872
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaagttcgtattcaaacggatcaaacggccaaaaataatcgaaaaaagatataaatgacacaatcgttt 115  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  43497276 gttttcatatgagttttagatttgatgtttgaaagttcatattcaaacggatcaaacggccaaaaataaccgaaaaaagatataaatgacacaatcgtt- 43497374  T
Q  116 ataataaattaagttaaagaacgacaagtgtaaatttgcctaaaataaataagcgggtgtctaagagattggtggttcgccaccaacatgcatttaaggg 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43497375 attataaattaagttaaagaacgacaagtgtaaatttgcctaaaataaataagcgggtgtctaagagattggtggttcgccaccaacatgcatttaaggg 43497474  T
Q  216 gcttttaacaataaaaattcaaaagttgtgaagaattg-----------------cttcaactatcatagtaagtttttcaccgctcaaacaagcttata 298  Q
    |||||||||||||||||||||||| |||||||||||||                  ||||||| ||||||||| ||||||||||||||||||||||||||    
T  43497475 gcttttaacaataaaaattcaaaaattgtgaagaattgtttcgttgtcagcacgtgttcaactttcatagtaaatttttcaccgctcaaacaagcttata 43497574  T
Q  299 cc--------------------aagtgtgaaaatcaattatatacttaaaaaatacaagtccaactcttctaataattgaactaaacatacacaaagagt 378  Q
    ||                    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43497575 ccaagttatttaatcataatttaagtgtgaaaatcaattatatacttaaaaaatacaattccaactcttctaataattgaactaaacatacacaaagagt 43497674  T
Q  379 agaatattgttatgagattgtaataaataaatctaagtaaacgtaaatgggaggttttattatgaatcacaaattcacatgatat--------aaattaa 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || ||||    
T  43497675 agaatattgttatgagattgtaataaataaatctaagtaaacgtaaatgggaggttttattatgaatcacaaattcacatgatataacttgccaagttaa 43497774  T
Q  471 taaaagtgagttaagaagcaccaagtaaagcaagaaagggaaagtaaaatggtacaaaaagtactattcaaaagcagaaatggtacacatgtcagagac 569  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43497775 taaaagtgagtcaagaagcaccaagtaaagcaagaaa-ggaaagtaaaatggtacaaaaagtactattcaaaagcagaaatggtacacatgtcagagac 43497872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 44533672 - 44533740
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaagttcgtattcaaacggatcaaacggccaaaaataa 84  Q
    |||||||||||||||||| |||||||| |||||| | | ||| |||||||| |||| || |||||||||    
T  44533672 gttttcatatgaattttaaatttgatgcttgaaaatccatatgcaaacggaccaaaaggacaaaaataa 44533740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 33431080 - 33431047
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaa 49  Q
    |||||||||||||||||| |||||||||||||||    
T  33431080 gttttcatatgaattttacatttgatgtttgaaa 33431047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 33459176 - 33459121
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaagttcgtattcaaacggatcaaa 71  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||    
T  33459176 gttttcatataaattttagatttgatgtttgaaaattcatattcaaacggaccaaa 33459121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 17282110 - 17282055
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaagttcgtattcaaacggatcaaa 71  Q
    ||||||||||||||||||||||||||| || ||| ||| ||| || ||||||||||    
T  17282110 gttttcatatgaattttagatttgatgcttaaaaattcatatgcagacggatcaaa 17282055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 51536581 - 51536636
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaagttcgtattcaaacggatcaaa 71  Q
    ||||||||||||||||||||||| |||||| ||| ||| ||| |||| ||||||||    
T  51536581 gttttcatatgaattttagatttaatgtttcaaaattcatatgcaaaaggatcaaa 51536636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 37843703 - 37843670
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaa 49  Q
    |||||||||||||| |||||||||||||||||||    
T  37843703 gttttcatatgaatattagatttgatgtttgaaa 37843670  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 8394651 - 8394684
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaa 49  Q
    ||||||||||||||||||||||||||||||||||    
T  8394651 gttttcatatgaattttagatttgatgtttgaaa 8394684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 9515528 - 9515583
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaagttcgtattcaaacggatcaaa 71  Q
    ||||||||||||||||||||||||||| |||||| |||   | |||||||||||||    
T  9515528 gttttcatatgaattttagatttgatgcttgaaaattctcttgcaaacggatcaaa 9515583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 8407033 - 8407004
Alignment:
Q  16 gttttcatatgaattttagatttgatgttt 45  Q
    ||||||||||||||||||||||||||||||    
T  8407033 gttttcatatgaattttagatttgatgttt 8407004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 4914946 - 4914979
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaa 49  Q
    ||||||||||||||||||||||||||||||||||    
T  4914946 gttttcatatgaattttagatttgatgtttgaaa 4914979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 13633824 - 13633780
Alignment:
Q  18 tttcatatgaattttagatttgatgtttgaaagttcgtattcaaa 62  Q
    ||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  13633824 tttcatatgaattttagatttgatgcttgaaaattcatatgcaaa 13633780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 25876338 - 25876294
Alignment:
Q  18 tttcatatgaattttagatttgatgtttgaaagttcgtattcaaa 62  Q
    |||||||||||||||| ||||||||||||||| || |||| ||||    
T  25876338 tttcatatgaattttaaatttgatgtttgaaaatttgtatgcaaa 25876294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 24559559 - 24559606
Alignment:
Q  16 gttttcatatgaattttagatttgatgtttgaaagttcgtattcaaac 63  Q
    ||||||||||||||||||||||| |||||||||| || |||| |||||    
T  24559559 gttttcatatgaattttagattttatgtttgaaaattagtatgcaaac 24559606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 11471903 - 11471871
Alignment:
Q  17 ttttcatatgaattttagatttgatgtttgaaa 49  Q
    |||||||||||||||||||||||||| ||||||    
T  11471903 ttttcatatgaattttagatttgatgcttgaaa 11471871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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