View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_low_7 (Length: 449)
Name: NF6998_low_7
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 12271539 - 12271969
Alignment:
| Q |
1 |
aaaaacaaactagaattaggatatggcttagcttaaatcttgcttagaataaaaaacaatcccatataacaggtagttgaaatcacgtcatgcaacatag |
100 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12271539 |
aaaaacaaactagaattaggatacagcttagtttaaatcttgcttagaataaaaaacaatcccatataacaggtagttgaaatcacatcatgcaacatag |
12271638 |
T |
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| Q |
101 |
aaaaataaagagaagtgcggctcatagtcatatgaagtagccatataaataaaattgatgtctgtataaataagaaaaagatgtgacatacttatcagtt |
200 |
Q |
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| T |
12271639 |
aaaaataaagagaagtgcggctcatagtcatatgaactagccatataaaagaaattgatgtctgtataaataaaaaaaagatgtgacatacttatcagtt |
12271738 |
T |
|
| Q |
201 |
cataagtaacaatcatcgttgttccataaagtgacatattcaaaaatcttggtccaaaccctctgtaaaacccccaccacccatcttccttaaggagagt |
300 |
Q |
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| T |
12271739 |
cataagtaacaatcatcgttgttccataaagtgacatattcaaaaatcttggtccaaaccctctgtaaaatccccaccacccatcttccttaaggagagt |
12271838 |
T |
|
| Q |
301 |
tcttgctgtcttcagtactgatggtcttccagaaccatagttgtccataacctatgtgaaaattaaaagtgacacatccaaagcaactatattaaagtca |
400 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
12271839 |
tcttgctgtcttcaatactgatggtcttccagaaccatagttgtccataacctatgtgaaaattaaaagtgacacatccaaaacaaccatattaaagtc- |
12271937 |
T |
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| Q |
401 |
aaaccataaattaaaagtatatactcgacaaaa |
433 |
Q |
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||||| ||||||||||||| |||||||||||| |
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| T |
12271938 |
-aaccaaaaattaaaagtatgtactcgacaaaa |
12271969 |
T |
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