View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6998_low_8 (Length: 399)
Name: NF6998_low_8
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 1492937 - 1492575
Alignment:
| Q |
18 |
agaaaaagagtaaaaaatacatctaaaaatttatagagatgttaaattaagagtcaaacacatttttgtaaaaagtcttacaagaagaatgaattattat |
117 |
Q |
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| T |
1492937 |
agaaaaagagtaaaaaatacatctaaaaatttatagaaatgttaaattaagagtcaaacacatttttgtaaaaagtcttacaagaagaatgaattattat |
1492838 |
T |
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| Q |
118 |
atgataaacctagaaatgacactttgtagtagatatataacacttataaaagtttatatataatatattttnnnnnnnnnnngtttatatataataaaaa |
217 |
Q |
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| T |
1492837 |
atgataaaactagaaatgacactttgtagtagatatataacacttataaaagtttatatataatatattt--aaaaaaaaatgtttatatataataaaaa |
1492740 |
T |
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| Q |
218 |
tttgtccaagcttcaagttgcttaaagacaggcctgctgcaagctaattcttttgaattagtgatatgggagttcataacgtgatttttaaactagattc |
317 |
Q |
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| T |
1492739 |
tttgtccaagcttcaagttgcttaaagacaggcctgctgcaagct-attcttttgaattagtgatatgggagttcataacgtgatttttgaactagattc |
1492641 |
T |
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| Q |
318 |
taaagtagttagtagactctgaagcactgacatttctgatcaaagacatatttgacgttcgacaca |
383 |
Q |
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| T |
1492640 |
taaaatagttaatagactctgaagcactgacatttttgatcaaagacatatttgacgttcgacaca |
1492575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 383
Target Start/End: Complemental strand, 1492547 - 1492470
Alignment:
| Q |
309 |
actagattctaaagtagt---tagtagactctgaagcactgacatttctgatcaaagacatatttgacgttcgacaca |
383 |
Q |
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| T |
1492547 |
actagattctaaagtagaaagtagtagactctaaagcactgacacttttgatcaaagatgtgtttgacgttcaacaca |
1492470 |
T |
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