View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6998_low_9 (Length: 320)
Name: NF6998_low_9
Description: NF6998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6998_low_9 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 21)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 303
Target Start/End: Complemental strand, 4334955 - 4334662
Alignment:
| Q |
10 |
aataatatcactcaaaccaatagatacaagtataaacaactcaaatacgaaaaataaaactccaaattaatacctgcatctgttgccatacaagtttgag |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4334955 |
aataatatcactcaaaccaatagatacaagtataaacaactcaaatacgaaaaataaaactccaaattaatacctgcatctgttgccatacaagtttgac |
4334856 |
T |
|
| Q |
110 |
attgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaacttt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4334855 |
attgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaacttt |
4334756 |
T |
|
| Q |
210 |
ctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4334755 |
ctggaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaaaac |
4334662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 43 - 303
Target Start/End: Original strand, 4125065 - 4125326
Alignment:
| Q |
43 |
aaacaactcaaa-tacgaaaaataaaactccaaattaatacctgcatctgttgccatacaagtttgagattgctgttttctaactcaatggaaactatat |
141 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||| |||||||||||||| || ||| |||||||||| |||||| |||||||||||||||||||| |||| |
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|
| T |
4125065 |
aaacaactcaaaatacaaaaaacaaaactccaaagtaatacctgcatctctttccacacaagtttgacattgctattttctaactcaatggaaacaatat |
4125164 |
T |
|
| Q |
142 |
ttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttg |
241 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | | | ||||||||||||||||||||||||||||| |
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|
| T |
4125165 |
ttctttgatagaagtttgaaggtatgcatgttaaaggaaatccattccagtgtagccatctcaattgttttgaaagatatttaaaatctccatcaagttg |
4125264 |
T |
|
| Q |
242 |
tgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
4125265 |
tgcaccagaaagttgaagcaatctgagtttcttcatcttcttaaatgcttcggtgctaaaac |
4125326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 67 - 303
Target Start/End: Complemental strand, 4344356 - 4344120
Alignment:
| Q |
67 |
aactccaaattaatacctgcatctgttgccatacaagtttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtat |
166 |
Q |
| |
|
|||| ||||||||||||||||||| || ||| |||||||||| | |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
4344356 |
aacttcaaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtat |
4344257 |
T |
|
| Q |
167 |
gcatgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctg |
266 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
|
|
| T |
4344256 |
gcatgctaacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatcta |
4344157 |
T |
|
| Q |
267 |
agtttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
4344156 |
agtttcttcatgttctcaaatgctttggtactaaaac |
4344120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 67 - 303
Target Start/End: Complemental strand, 4352635 - 4352399
Alignment:
| Q |
67 |
aactccaaattaatacctgcatctgttgccatacaagtttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtat |
166 |
Q |
| |
|
|||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||| ||| |||||||| |||||||||| ||| ||||||| ||| |
|
|
| T |
4352635 |
aactccaaattaatacctgcatctctttccaaacaagtttgacattgctgttttctaacacaacggaaactaaatttctttgatagaagtttgaagctat |
4352536 |
T |
|
| Q |
167 |
gcatgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctg |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
4352535 |
acatgttaaaggaaatccattccagtgcagccatttcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctg |
4352436 |
T |
|
| Q |
267 |
agtttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
4352435 |
agtttcttcatgttctcaaatgctttggtactaaaac |
4352399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 43 - 303
Target Start/End: Complemental strand, 4359837 - 4359576
Alignment:
| Q |
43 |
aaacaactcaaa-tacgaaaaataaaactccaaattaatacctgcatctgttgccatacaagtttgagattgctgttttctaactcaatggaaactatat |
141 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||| || ||| |||||| ||| |||||||||||||||| |||||||||||| || |
|
|
| T |
4359837 |
aaacaactcaaaatactaaaaataaaactcaaaattaatacctgcatctctttccacacaagtctgatattgctgttttctaacacaatggaaactaaat |
4359738 |
T |
|
| Q |
142 |
ttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttg |
241 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
4359737 |
ttctttgatagaagtttgacggtatgcatgttaaaggaaatccattccactgcagccatctcaattttcttgaaagatgtttaaaatctccatcaagttg |
4359638 |
T |
|
| Q |
242 |
tgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
| | || |||||||| |||||||||||||||||||| |||| ||||| |||||| ||||||| |
|
|
| T |
4359637 |
tacaccggaaagttgcagcaatctgagtttcttcatgttctcaaatgttttggtgctaaaac |
4359576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 67 - 301
Target Start/End: Original strand, 4321684 - 4321918
Alignment:
| Q |
67 |
aactccaaattaatacctgcatctgttgccatacaagtttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtat |
166 |
Q |
| |
|
||||||||| ||||||||| |||| || ||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
4321684 |
aactccaaactaatacctgaatctctttccacacaagtttagcattgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtat |
4321783 |
T |
|
| Q |
167 |
gcatgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctg |
266 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | || ||||| |||| ||||||||||||||||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
4321784 |
gcatcttaaaggaaatccattccagtgcagccattttaaatttcttgaaatatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctg |
4321883 |
T |
|
| Q |
267 |
agtttcttcatcttcttaaatgctttggtactaaa |
301 |
Q |
| |
|
||||||||||| |||| ||||| ||| |||||||| |
|
|
| T |
4321884 |
agtttcttcatgttctcaaatgttttagtactaaa |
4321918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 105 - 303
Target Start/End: Original strand, 4134514 - 4134712
Alignment:
| Q |
105 |
ttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctca |
204 |
Q |
| |
|
|||| |||| ||||||||| || ||||||||||| ||||||||| || |||| || || |||||||||||||| ||||||| ||||||||||| |
|
|
| T |
4134514 |
ttgatattgttgttttctagctgaatggaaactaaatttctttggtaaaagtttgtgggcatcaatgttaaaggaaattcattccaacacagccatctca |
4134613 |
T |
|
| Q |
205 |
actttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
4134614 |
aatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaggttgaagcaatctcagtttcttcatgttctcaaatgcattggtactaaaac |
4134712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 6499130 - 6499213
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggta |
296 |
Q |
| |
|
||||| |||||||||||||||| ||| || | || ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6499130 |
gaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatcttcttaaatgctttggta |
6499213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 6623265 - 6623348
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggta |
296 |
Q |
| |
|
||||| |||||||||||||||| ||| || | || ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6623265 |
gaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatcttcttaaatgctttggta |
6623348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 6533478 - 6533596
Alignment:
| Q |
171 |
gttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtt |
270 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||| | | ||| |||||| ||||||||||||||| ||||| | |||| |||||||||||||||||| | |
|
|
| T |
6533478 |
gttaatggaaatccatgccagtacagccatctaagatctcttgaaagacatttaaaatctccattcagttgcacaccagcaagttgaagcaatctgagct |
6533577 |
T |
|
| Q |
271 |
tcttcatcttcttaaatgc |
289 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
6533578 |
tattcatcttcttaaatgc |
6533596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 6757575 - 6757493
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggt |
295 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| | ||| |||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6757575 |
gaaagatatttaaaatctccattaagctgtaccccaacaagttgtagcaatctgagtttattcatcttcttaaatgctttggt |
6757493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 6650246 - 6650163
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggta |
296 |
Q |
| |
|
||||| |||||||||||||||| ||| || | || ||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
6650246 |
gaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatcttcttgaatgctttggta |
6650163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 6675184 - 6675101
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggta |
296 |
Q |
| |
|
||||| |||||||||||||||| ||| || | || |||||||||||||| |||||||| |||||||||||| ||||||||||| |
|
|
| T |
6675184 |
gaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaacctgagtttattcatcttcttagatgctttggta |
6675101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 296
Target Start/End: Original strand, 6546735 - 6546818
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggta |
296 |
Q |
| |
|
||||| |||||||||||||||| ||| | | ||| |||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6546735 |
gaaaggtatttaaaatctccattaagcttcaccccaccaagtcgaagcaatctgagtttattcatcttcttaaatgctttggta |
6546818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 6835429 - 6835306
Alignment:
| Q |
171 |
gttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtt |
270 |
Q |
| |
|
||||| |||||||||| ||||| || |||||| | ||||| ||||| | |||||||||||| | ||||| | |||| |||||||||||||||||||| |
|
|
| T |
6835429 |
gttaatggaaatccatgccagtacaaccatctaagatttctcgaaaggtgtttaaaatctcctttaagtttcaccccagcaagttgaagcaatctgagtt |
6835330 |
T |
|
| Q |
271 |
tcttcatcttcttaaatgctttgg |
294 |
Q |
| |
|
| | |||||||| |||||| |||| |
|
|
| T |
6835329 |
tatacatcttctgaaatgcattgg |
6835306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 6772359 - 6772241
Alignment:
| Q |
177 |
ggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttca |
276 |
Q |
| |
|
|||||||||| ||||| |||||| || | | ||| ||||| |||||| ||||||| | |||||| | |||| || |||||||||||||||| |||| |
|
|
| T |
6772359 |
ggaaatccatgccagtacagccacctaagatctcttgaaaggtatttataatctcccttaagttgcacaccagcgaggcgaagcaatctgagtttgttca |
6772260 |
T |
|
| Q |
277 |
tcttcttaaatgctttggt |
295 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6772259 |
tcttcttaaatgctttggt |
6772241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 256 - 295
Target Start/End: Original strand, 6588817 - 6588856
Alignment:
| Q |
256 |
gaagcaatctgagtttcttcatcttcttaaatgctttggt |
295 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6588817 |
gaagcaatctgagtttattcatcttcttaaatgctttggt |
6588856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 6714963 - 6714881
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggt |
295 |
Q |
| |
|
|||||||||||||||||||| | ||| | | |||| ||| |||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
6714963 |
gaaagatatttaaaatctcctttaagcttcaccccagcaaggcgaagcaatctgagtttattcatcttcttaaatgatttggt |
6714881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 6795466 - 6795430
Alignment:
| Q |
256 |
gaagcaatctgagtttcttcatcttcttaaatgcttt |
292 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6795466 |
gaagcaatctgagtttgttcatcttcttaaatgcttt |
6795430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 295
Target Start/End: Complemental strand, 6814736 - 6814697
Alignment:
| Q |
256 |
gaagcaatctgagtttcttcatcttcttaaatgctttggt |
295 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
6814736 |
gaagcaatctgagtttgttcatctttttaaatgctttggt |
6814697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 7887391 - 7887473
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggt |
295 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||| ||||||||| ||||| || || | |||||||| |||||||||||| |
|
|
| T |
7887391 |
gaaagatatttgtaatctccattaagttgtatgccaacaagttgaagaaatcttagcttgtccatcttctcaaatgctttggt |
7887473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 76 - 303
Target Start/End: Original strand, 5074418 - 5074645
Alignment:
| Q |
76 |
ttaatacctgcatctgttgccatacaagtttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaa |
175 |
Q |
| |
|
|||||||||| ||| || ||| |||||||||| |||||||||| |||||||||||||||||| ||||| |||| || ||||||| ||||||||||| |
|
|
| T |
5074418 |
ttaatacctgggtctttttccacacaagtttgatattgctgtttactaactcaatggaaactaaatttccttgataaaagcttgaaggaatgcatgttaa |
5074517 |
T |
|
| Q |
176 |
aggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttc |
275 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| ||||||| || |||||| |||||||||||| | |||| |||||||||||||| ||||| | | |
|
|
| T |
5074518 |
aggaaatccattccatgaaagccatctcaaatttcttgaaagatgttcaaaatccccatcaagttgtacaccagcaagttgaagcaatcgaagtttttcc |
5074617 |
T |
|
| Q |
276 |
atcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
5074618 |
atcttcttaaatgctttagtactaaaac |
5074645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 59 - 303
Target Start/End: Complemental strand, 5342998 - 5342754
Alignment:
| Q |
59 |
aaaaataaaactccaaattaatacctgcatctgttgccatacaagtttgagattgctgttttctaactcaatggaaactatatttctttgacggaacttt |
158 |
Q |
| |
|
||||| ||||||| |||||||||||| ||| || ||| | |||||||| | |||||||||| ||||| |||||||||| ||||| |||| || ||| |
|
|
| T |
5342998 |
aaaaaaaaaactcaaaattaataccttgttctctttccacagaagtttgacactgctgttttcaaactccatggaaactaaatttccttgatcaaagttt |
5342899 |
T |
|
| Q |
159 |
gaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaa |
258 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||| | |||||||||||||| | ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5342898 |
ttaggtatgcatcttaaaggaaatccattccaacatagccatcttagttttctagaaagatagtcaaaatctccatcaagttgtacgccagaaagttgaa |
5342799 |
T |
|
| Q |
259 |
gcaatctgagtttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||||||| ||||| |||||||| | ||||||||| || ||||||| |
|
|
| T |
5342798 |
gcaatcttagtttattcatcttttcaaatgctttagttctaaaac |
5342754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 103 - 301
Target Start/End: Complemental strand, 5396380 - 5396182
Alignment:
| Q |
103 |
gtttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatct |
202 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||| ||| | ||| || ||||||| |||||| ||||||||||| ||||||| |||||||| |
|
|
| T |
5396380 |
gtttgacattgctgtttactaactcaatggaaactaaattcccctgataaaagcttgaaggaatgcattttaaaggaaatgcattccaagaaagccatct |
5396281 |
T |
|
| Q |
203 |
caactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaaa |
301 |
Q |
| |
|
|| ||||| |||||||||| |||||| |||||||||||| |||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
5396280 |
cacatttcttgaaagatattcaaaatcaccatcaagttgtaaaccagcaagttgaagcagtctgagttttttcatcttcttgaatgctttggtactaaa |
5396182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 110 - 299
Target Start/End: Complemental strand, 5176178 - 5175989
Alignment:
| Q |
110 |
attgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaacttt |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||| || ||||||| ||||||| |||||||||||||||||| |||||||||| ||| |
|
|
| T |
5176178 |
attgctgttttctaactcgatggaaactaaatttccttgataaaagcttgaaggaatgcatgataaaggaaatccattccaagaaagccatctcagattt |
5176079 |
T |
|
| Q |
210 |
ctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtacta |
299 |
Q |
| |
|
|| |||||||| | |||||| ||||||||||| | |||| |||||||||||| |||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
5176078 |
cttgaaagatactcaaaatccccatcaagttgcacaccagcaagttgaagcaacctgagtttcttcatgttctcaaatgctttagtacta |
5175989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 110 - 299
Target Start/End: Complemental strand, 5278005 - 5277816
Alignment:
| Q |
110 |
attgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaacttt |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| |||| || ||||||| ||||||| |||||||||||||||||| |||||||||| ||| |
|
|
| T |
5278005 |
attgctgttttctaactcgatggaaactaaatttccttgataaaagcttgaaggaatgcatgataaaggaaatccattccaagaaagccatctcagattt |
5277906 |
T |
|
| Q |
210 |
ctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtacta |
299 |
Q |
| |
|
|| |||||||| | |||||| ||||||||||| | |||| |||||||||||| |||||||||||||| |||| ||||||||| |||||| |
|
|
| T |
5277905 |
cttgaaagatactcaaaatccccatcaagttgcacaccagcaagttgaagcaaactgagtttcttcatgttctcaaatgctttagtacta |
5277816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 303
Target Start/End: Original strand, 5147626 - 5147828
Alignment:
| Q |
101 |
aagtttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccat |
200 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| ||||| | || || ||| ||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
5147626 |
aagtttgatattgctattttctaactcaatggaaactaaatttcctagataaaagcttgtgggtatgcatgttagaggaaatccattccaagaaagccat |
5147725 |
T |
|
| Q |
201 |
ctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaa |
300 |
Q |
| |
|
|||| ||||| |||| |||| |||||| |||||||||||| | |||| ||||||||||||||| ||| | ||||||||||||||||||| ||||||| |
|
|
| T |
5147726 |
ctcagatttctcgaaatgtattcaaaatccccatcaagttgtactccagtaagttgaagcaatctcagtcttgtcatcttcttaaatgctttagtactaa |
5147825 |
T |
|
| Q |
301 |
aac |
303 |
Q |
| |
|
||| |
|
|
| T |
5147826 |
aac |
5147828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 5382924 - 5382750
Alignment:
| Q |
114 |
ctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaactttctag |
213 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||| || |||||||||||| ||| |||||||||||| ||||| ||| ||||| | |||| | |
|
|
| T |
5382924 |
ctgttttctaactctatggaaactaaatttctttgacaaaagtttgaaggtatgaatgataaaggaaatcctttccaacacagtcatcttagttttcctg |
5382825 |
T |
|
| Q |
214 |
aaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatg |
288 |
Q |
| |
|
||||||| || |||||||||||||||||| | |||| ||||||||||||||| ||| | | |||||||||||||| |
|
|
| T |
5382824 |
aaagatacttgaaatctccatcaagttgtactccagcaagttgaagcaatcttagtctttccatcttcttaaatg |
5382750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 170 - 303
Target Start/End: Complemental strand, 5095291 - 5095158
Alignment:
| Q |
170 |
tgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagt |
269 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
5095291 |
tgttaaagaaaatccattccaagacagccatctcagatttctcgaaagatattcaaaatctccatcaagtttaaccccagcaagttgaagcaatctgagt |
5095192 |
T |
|
| Q |
270 |
ttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
|| |||||||||| |||||||| |||||||||| |
|
|
| T |
5095191 |
ctcgtcatcttcttgaatgctttagtactaaaac |
5095158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 289
Target Start/End: Complemental strand, 5432730 - 5432545
Alignment:
| Q |
104 |
tttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctc |
203 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||| |||| |||| || |||| ||||||||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
5432730 |
tttgacattactgttttctaactcgatggaaactaaatttgcttgataaaagtttgtaggtatgcatgataacggaaatccattccaagaaagccatctc |
5432631 |
T |
|
| Q |
204 |
aactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgc |
289 |
Q |
| |
|
| ||||| ||||||| || ||||| |||||||| || | |||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5432630 |
agatttcttgaaagatgttcaaaattcccatcaagctgcacaccagcaagttcaagcaatctgagtttcttcatcttcttaaatgc |
5432545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 5424864 - 5424742
Alignment:
| Q |
181 |
atccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatctt |
280 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||||||||||||| ||||| | | |||| ||||||||||||||||||| || ||||||| |
|
|
| T |
5424864 |
atccattccaagacagccatctcagatttctcgaaagatatttaaaatctccattaagttttaccccagcaagttgaagcaatctgagtctcgtcatctt |
5424765 |
T |
|
| Q |
281 |
cttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||| |||||||| |||||||||| |
|
|
| T |
5424764 |
cttgaatgctttagtactaaaac |
5424742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 5103706 - 5103839
Alignment:
| Q |
170 |
tgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagt |
269 |
Q |
| |
|
|||||||| |||||||||||| |||| || ||| ||||| |||||||||| ||||||||||||||||| | | |||||||||||||||| ||| ||| |
|
|
| T |
5103706 |
tgttaaagaaaatccattccaagacagcaatttcagatttctcgaaagatattcaaaatctccatcaagttttactccagaaagttgaagcagtctaagt |
5103805 |
T |
|
| Q |
270 |
ttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| |
|
|
| T |
5103806 |
ctcttcatcttcttgaatgctttagtactaaaac |
5103839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 5349474 - 5349366
Alignment:
| Q |
195 |
agccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttgg |
294 |
Q |
| |
|
|||||||||| ||| | |||||||||| ||||||||||||||||| | | |||| ||||||||||||||||||| ||||||||||||| |||||||| | |
|
|
| T |
5349474 |
agccatctcagattttttgaaagatattcaaaatctccatcaagttttaccccagcaagttgaagcaatctgagtctcttcatcttcttgaatgctttag |
5349375 |
T |
|
| Q |
295 |
tactaaaac |
303 |
Q |
| |
|
||||||||| |
|
|
| T |
5349374 |
tactaaaac |
5349366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 5369598 - 5369474
Alignment:
| Q |
179 |
aaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatc |
278 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||| | | |||| |||||| |||||||||||||| |||||| |
|
|
| T |
5369598 |
aaatccattccaagacagccatctcagatttctggaaagatattcaaaatctccatcaagttttaccccagcaagttggagcaatctgagtttgttcatc |
5369499 |
T |
|
| Q |
279 |
ttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||||| |||||||| || ||||||| |
|
|
| T |
5369498 |
ttcttgaatgctttagtgctaaaac |
5369474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 181 - 303
Target Start/End: Original strand, 5067964 - 5068086
Alignment:
| Q |
181 |
atccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatctt |
280 |
Q |
| |
|
|||||||||| ||||||| ||| ||||| |||||||||| ||||||||||||||| | | | |||| ||||||||||||||||||| |||||||||| |
|
|
| T |
5067964 |
atccattccaagacagccatatcagatttctcgaaagatattcaaaatctccatcaaggtttaccccagcaagttgaagcaatctgagtctcttcatctt |
5068063 |
T |
|
| Q |
281 |
cttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||| |||||||| |||||||||| |
|
|
| T |
5068064 |
cttgaatgctttagtactaaaac |
5068086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 301
Target Start/End: Original strand, 5182618 - 5182809
Alignment:
| Q |
110 |
attgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaacttt |
209 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||| || | ||||| |||||| | ||||||||||||||||| |||||| ||| ||| |
|
|
| T |
5182618 |
attgctgtttactaactcaatggaaactaaattttcttgataaaaactcgaaggaatgcatttcaaaggaaatccattccaagaaagccatatcagattt |
5182717 |
T |
|
| Q |
210 |
ctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaaa |
301 |
Q |
| |
|
|| |||||||||| ||| || || ||||||||| | | || ||||||||||| ||| ||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
5182718 |
cttgaaagatattcaaagtccccctcaagttgtacactagcaagttgaagcagtctaagttttttcatctccttgaatgctttggtactaaa |
5182809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 303
Target Start/End: Original strand, 5355360 - 5355562
Alignment:
| Q |
101 |
aagtttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccat |
200 |
Q |
| |
|
|||||||| |||||| || |||||||| |||||||||| ||||| | || | |||| ||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
5355360 |
aagtttgacattgctattctctaactctatggaaactaaatttcctagaaaaaggtttgttggtatatgtgttaaaggaaattcattccaagacagccac |
5355459 |
T |
|
| Q |
201 |
ctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaa |
300 |
Q |
| |
|
|||| ||||| |||||| ||| ||||| ||||||||||| | | |||| |||| |||||||| | ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
5355460 |
ctcagatttcttgaaagacattcaaaatttccatcaagttttactccagcaagtagaagcaatttcagtctcttcatcttcttaaatgctttagtactaa |
5355559 |
T |
|
| Q |
301 |
aac |
303 |
Q |
| |
|
||| |
|
|
| T |
5355560 |
aac |
5355562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 303
Target Start/End: Original strand, 5158228 - 5158436
Alignment:
| Q |
95 |
ccatacaagtttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgc |
194 |
Q |
| |
|
||||| |||||||| |||||| || |||||||| |||||||||| |||| | | || |||| |||||| |||| ||| ||||| |||||| | |
|
|
| T |
5158228 |
ccataaaagtttgatattgctattctctaactcgatggaaactaaattttctatataaaagtttgtaggtatatgtgttgaagaaaatctattccaagac |
5158327 |
T |
|
| Q |
195 |
agccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttgg |
294 |
Q |
| |
|
|||||||||| |||| |||| |||||||||||||||| |||||| | |||| ||||||||||||||| ||| ||||||||||||| |||||||| | |
|
|
| T |
5158328 |
agccatctcagacttctcgaaatatatttaaaatctccaacaagtttgaccccagcaagttgaagcaatctaagtctcttcatcttcttgaatgctttag |
5158427 |
T |
|
| Q |
295 |
tactaaaac |
303 |
Q |
| |
|
|||| |||| |
|
|
| T |
5158428 |
tactgaaac |
5158436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 303
Target Start/End: Complemental strand, 5446285 - 5446195
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
|||| ||||| ||||||||||||||||| | | ||| ||||||||| ||||||||| |||||||||| | ||||||||| |||||||||| |
|
|
| T |
5446285 |
gaaacatattcaaaatctccatcaagttttacctcagcaagttgaagaaatctgagtctcttcatcttttcaaatgctttagtactaaaac |
5446195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 291
Target Start/End: Original strand, 5690849 - 5691029
Alignment:
| Q |
111 |
ttgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaactttc |
210 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||| || ||||||| ||| |||||||||||||||||| ||| | |||||||| ||| |
|
|
| T |
5690849 |
ttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatggatgttaaaggaaatccatcccaagaaaaccatctcagatttt |
5690948 |
T |
|
| Q |
211 |
tagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctt |
291 |
Q |
| |
|
| ||||| | | ||||| |||||||||| | | |||| |||||||| |||||| ||||| | |||||||| |||||||| |
|
|
| T |
5690949 |
ttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagtttttccatcttctcaaatgctt |
5691029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 303
Target Start/End: Original strand, 5260917 - 5261040
Alignment:
| Q |
180 |
aatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatct |
279 |
Q |
| |
|
||||||||||| |||| |||||| | ||| |||| ||||| |||||| |||||||||| | | ||| |||||||||||||||||| ||||||||| |
|
|
| T |
5260917 |
aatccattccacgacagcagtctcaaatctcttgaaacatattcaaaatccccatcaagttttacttcagcaagttgaagcaatctgagactcttcatct |
5261016 |
T |
|
| Q |
280 |
tcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
| | ||||||||| |||||||||| |
|
|
| T |
5261017 |
tttcaaatgctttagtactaaaac |
5261040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 303
Target Start/End: Original strand, 5284935 - 5285038
Alignment:
| Q |
200 |
tctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggtacta |
299 |
Q |
| |
|
|||||| | ||| |||| ||||| |||||| |||||||||| | | | | |||||||||||||||||| |||||||||| | ||||||||| |||||| |
|
|
| T |
5284935 |
tctcaaatctcttgaaacatattcaaaatccccatcaagttttacttctgcaagttgaagcaatctgagactcttcatcttttcaaatgctttagtacta |
5285034 |
T |
|
| Q |
300 |
aaac |
303 |
Q |
| |
|
|||| |
|
|
| T |
5285035 |
aaac |
5285038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 5132687 - 5132820
Alignment:
| Q |
170 |
tgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgag- |
268 |
Q |
| |
|
||||||||||||||||||||| || |||||| | ||||| ||||| || ||||||||||||||||| | | ||| |||||||||||||||||| |
|
|
| T |
5132687 |
tgttaaaggaaatccattccaacacaaccatcttagatttcttgaaaggatttcaaaatctccatcaagttttaccccatcaagttgaagcaatctgagc |
5132786 |
T |
|
| Q |
269 |
--tttcttcatcttcttaaatgctttggtactaa |
300 |
Q |
| |
|
|| |||||| |||||||||||| ||||||| |
|
|
| T |
5132787 |
ctcgtcgtcatctccttaaatgctttagtactaa |
5132820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 74 - 301
Target Start/End: Original strand, 36214533 - 36214760
Alignment:
| Q |
74 |
aattaatacctgcatctgttgccatacaagtttgagattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgtt |
173 |
Q |
| |
|
|||||||||||| || || ||| ||| |||||| ||||||||||||||||||||||||||||| |||| |||| || ||||||| ||||||||| |
|
|
| T |
36214533 |
aattaatacctggggctcttcccacacatgtttgacattgctgttttctaactcaatggaaactaaattttcttgataaaagcttgaaggaatgcatgtt |
36214632 |
T |
|
| Q |
174 |
aaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttct |
273 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||| | |||||||| | ||| || |||||||||||| | |||| ||||||||||||||||||| | | |
|
|
| T |
36214633 |
aaaggaaaaccattccaagaaagccatctcaaattttttgaaagatactcaaagtccccatcaagttgtacaccagcaagttgaagcaatctgagtcttt |
36214732 |
T |
|
| Q |
274 |
tcatcttcttaaatgctttggtactaaa |
301 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
36214733 |
tcatcttcttaaatgctttagtactaaa |
36214760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 18934542 - 18934463
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgcttt |
292 |
Q |
| |
|
||||||||||| ||||||||| ||||||| | |||||||||||||||||| | || || |||||||||| |||||||| |
|
|
| T |
18934542 |
gaaagatatttgtaatctccattaagttgtacaccagaaagttgaagcaatttaagcttattcatcttctcgaatgcttt |
18934463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 114 - 288
Target Start/End: Original strand, 9385 - 9559
Alignment:
| Q |
114 |
ctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgttaaaggaaatccattccagtgcagccatctcaactttctag |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || |||||||||||| ||| |||||||||||| ||||| ||||||||| | ||||| | |
|
|
| T |
9385 |
ctgttttctaactcaatggaaactaaatttctttgataaaagtttgaaggtatgaatggtaaaggaaatcctttccaacacagccatcttagttttcttg |
9484 |
T |
|
| Q |
214 |
aaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatg |
288 |
Q |
| |
|
||||||| | |||||||||||||||||| | |||| ||||||||||||||| ||| ||| |||||||| ||||| |
|
|
| T |
9485 |
aaagatactcgaaatctccatcaagttgtactccagcaagttgaagcaatcttagtctctccatcttctcaaatg |
9559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 161 - 303
Target Start/End: Complemental strand, 8877122 - 8876980
Alignment:
| Q |
161 |
aggtatgcatgttaaaggaaatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagc |
260 |
Q |
| |
|
||||||||| |||||||||||| ||||||| | | |||||| ||| | |||||| ||| ||| | ||||||||||||| |||| | |||||||||| |
|
|
| T |
8877122 |
aggtatgcaggttaaaggaaatgcattccaagataacaatctcagatttttggaaagaaattcaaagtttccatcaagttgtacgccggcaagttgaagc |
8877023 |
T |
|
| Q |
261 |
aatctgagtttcttcatcttcttaaatgctttggtactaaaac |
303 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
8877022 |
aatctgagtctcttcatcttcttaaatgctttagtactaaaac |
8876980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 5837 - 5754
Alignment:
| Q |
213 |
gaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttcttcatcttcttaaatgctttggta |
296 |
Q |
| |
|
||||| |||||||||||||||| ||| || | || ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5837 |
gaaaggtatttaaaatctccattaagctgaaccccggaaagttgaagcaatctgagtttattcatcttcttaaatgctttggta |
5754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 269
Target Start/End: Original strand, 22585161 - 22585250
Alignment:
| Q |
180 |
aatccattccagtgcagccatctcaactttctagaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagt |
269 |
Q |
| |
|
||||||||||| |||| ||||||||| ||| |||| |||| |||| || |||||||||| | | ||| ||||||||||||||||||| |
|
|
| T |
22585161 |
aatccattccatgacagcaatctcaactctcttgaaacatatctaaagtccccatcaagttttacttcagcaagttgaagcaatctgagt |
22585250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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