View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6999_high_10 (Length: 229)
Name: NF6999_high_10
Description: NF6999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6999_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 17956443 - 17956657
Alignment:
| Q |
1 |
ctaacaaagttcttgtaacccgagatatcttcccattatttcaacatctgaaatagtcgcgacccccaattttgctcatcaactgaaagaactaaagcac |
100 |
Q |
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| T |
17956443 |
ctaacaaagttcttgtaacccgagatatctgcccattatttcaacctctgaaatagtcgcgaccccgaattttgctcatcaactgaaagaactaaagcac |
17956542 |
T |
|
| Q |
101 |
aatgatcaaacaaactacgcaactgggccacttgaagataattcggccacctcaaacaccaactttcagataacaaaaatctatcaaggcgactcataga |
200 |
Q |
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| T |
17956543 |
aatgatcaaacaaactacgcaactgggtcacttgaagataattcggccacctcaaacgccaactttcagataacaaaa----atcaaggcgactcataga |
17956638 |
T |
|
| Q |
201 |
atgaccatcacctcaatac |
219 |
Q |
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|||||||||||||| |||| |
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| T |
17956639 |
atgaccatcacctcgatac |
17956657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 3437652 - 3437514
Alignment:
| Q |
64 |
ccccaattttgctcatcaactgaaagaactaaagcacaatgatcaaacaaactacgcaactgggccacttgaagataattcggccacctcaaacaccaac |
163 |
Q |
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| T |
3437652 |
ccccaattttgctcatcaactgagaga-ctaaagcacaatgatctgacgaactacacaattgagctacttaaaggcaattcgaccacctaaaataccatc |
3437554 |
T |
|
| Q |
164 |
tttcagataacaaaaatctatcaaggcgactcatagaatg |
203 |
Q |
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| T |
3437553 |
tttcagataacaaaaatctatctatgcggctcatataatg |
3437514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 17108830 - 17108770
Alignment:
| Q |
63 |
cccccaattttgctcatcaactgaaagaactaaagcacaatgatcaaacaaactacgcaac |
123 |
Q |
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| T |
17108830 |
cccccaattttgctcatcaattgagagaactaaagcaaaatgatcagacaaactacgcaac |
17108770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 15105364 - 15105263
Alignment:
| Q |
63 |
cccccaattttgctcatcaactgaaagaactaaagcacaatgatcaaacaaactacgcaactgggccacttgaagataattcggccacctcaaacaccaa |
162 |
Q |
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||||||||||| ||||||||||||| |||| |||||||||||| |||||| ||| ||||| || |||||||| |||| |||||||| ||||||||| |
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| T |
15105364 |
cccccaattttattcatcaactgaaatgactattgcacaatgatcagacaaaccacgtaactgtgctacttgaaggcaattgggccaccttaaacaccaa |
15105265 |
T |
|
| Q |
163 |
ct |
164 |
Q |
| |
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|| |
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| T |
15105264 |
ct |
15105263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 17099478 - 17099547
Alignment:
| Q |
145 |
ggccacctcaaacaccaactttcagataacaaaaatctatcaaggcgactcatagaatgaccatcacctc |
214 |
Q |
| |
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| T |
17099478 |
ggccatctcaaacaccaagcttcagataataaaaatctatcaattcgactcatcgaatgaccatcccctc |
17099547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 23876209 - 23876121
Alignment:
| Q |
96 |
agcacaatgatcaaacaaactacgcaactgggccacttgaagataattcggccacctcaaacaccaactttcagataacaaaaatctat |
184 |
Q |
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||||||||||| | |||| | || |||||||| | |||||| |||| |||||||| ||||||||||||||||| || |||||||||| |
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| T |
23876209 |
agcacaatgattagacaagccacataactgggctgcctgaagacaatttggccaccttaaacaccaactttcagacaataaaaatctat |
23876121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 42456100 - 42456038
Alignment:
| Q |
152 |
tcaaacaccaactttcagataacaaaaatctatcaaggcgactcatagaatgaccatcacctc |
214 |
Q |
| |
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|||||||||| || |||||||| ||||||| ||||| |||||||| ||| | ||||||||||| |
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| T |
42456100 |
tcaaacaccacctgtcagataataaaaatcgatcaatgcgactcacagatttaccatcacctc |
42456038 |
T |
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