View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6999_low_1 (Length: 445)
Name: NF6999_low_1
Description: NF6999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6999_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 445
Target Start/End: Original strand, 31755766 - 31756189
Alignment:
| Q |
10 |
attattctcgaaccttgacgcataatgaccgattttatcgaagatgcacttgaatttgaactgttgctactacctcttgtgactgttggttgcacagaac |
109 |
Q |
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| T |
31755766 |
attattctcgaaccttgacgcataatgaccgattttatcgaagatgcacttgaatttgaactgttgctactacctcttgtgactgttggttgcacagaac |
31755865 |
T |
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| Q |
110 |
tatgaactttctttttcccaaaacaaacacctgtccataaacaataaattattgtacatataccaataaaacctcccactgatccaacaattgcaaaaac |
209 |
Q |
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| T |
31755866 |
tgtgaactttctttttcccaaaacaaacacctgtccataaacaataaattattgtacatataccaataaaacctcccactgatccaacaattgcaaaaac |
31755965 |
T |
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| Q |
210 |
caataatccggttgtcaatgtcttcgatcgaggag---gagaaggtgccggtgccggtggaggttgaactggtggaggcggcggcgggcttgttatttga |
306 |
Q |
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| T |
31755966 |
caataatccggttgtcaaagtcttcgatcgagaagatcgaggaggagaaggtg---------------ctggtggaggcggcggcgggcttgttatttga |
31756050 |
T |
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| Q |
307 |
gtgttacatatatttggcttgcaaatgtgaccaaagttagaacataatgattgtgaatcaggatatataccacactcactacaagaaggttgaacacaag |
406 |
Q |
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| T |
31756051 |
gtgttacatatatttgggttgcaaatgtgaccaaagttagaacataatgattgtgaatcaggatatataccacactcactacaagaagattgaacacaag |
31756150 |
T |
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| Q |
407 |
gccccggaagaatccgagacaaaggaagaatagattcag |
445 |
Q |
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| T |
31756151 |
gccccggaagaatccgagacaaaggaagaatagattcag |
31756189 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 35559055 - 35559131
Alignment:
| Q |
81 |
acctcttgtgactgttggttgcacagaactatgaactttctttttcccaaaacaaacacctgtccataaacaataaa |
157 |
Q |
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| T |
35559055 |
acctctagtgattgttggttgaacggaattgtgaactttcttcttaccaaaacacacaccactccacaaacaataaa |
35559131 |
T |
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