View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6999_low_10 (Length: 229)

Name: NF6999_low_10
Description: NF6999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6999_low_10
NF6999_low_10
[»] chr4 (1 HSPs)
chr4 (1-219)||(17956443-17956657)
[»] chr3 (1 HSPs)
chr3 (64-203)||(3437514-3437652)
[»] chr6 (2 HSPs)
chr6 (63-123)||(17108770-17108830)
chr6 (63-164)||(15105263-15105364)
[»] chr7 (1 HSPs)
chr7 (145-214)||(17099478-17099547)
[»] chr5 (2 HSPs)
chr5 (96-184)||(23876121-23876209)
chr5 (152-214)||(42456038-42456100)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 17956443 - 17956657
Alignment:
Q  1 ctaacaaagttcttgtaacccgagatatcttcccattatttcaacatctgaaatagtcgcgacccccaattttgctcatcaactgaaagaactaaagcac 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17956443 ctaacaaagttcttgtaacccgagatatctgcccattatttcaacctctgaaatagtcgcgaccccgaattttgctcatcaactgaaagaactaaagcac 17956542  T
Q  101 aatgatcaaacaaactacgcaactgggccacttgaagataattcggccacctcaaacaccaactttcagataacaaaaatctatcaaggcgactcataga 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||    
T  17956543 aatgatcaaacaaactacgcaactgggtcacttgaagataattcggccacctcaaacgccaactttcagataacaaaa----atcaaggcgactcataga 17956638  T
Q  201 atgaccatcacctcaatac 219  Q
    |||||||||||||| ||||    
T  17956639 atgaccatcacctcgatac 17956657  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 64 - 203
Target Start/End: Complemental strand, 3437652 - 3437514
Alignment:
Q  64 ccccaattttgctcatcaactgaaagaactaaagcacaatgatcaaacaaactacgcaactgggccacttgaagataattcggccacctcaaacaccaac 163  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||  || |||||| ||| || || |||| |||  |||||| |||||| ||| |||| |    
T  3437652 ccccaattttgctcatcaactgagaga-ctaaagcacaatgatctgacgaactacacaattgagctacttaaaggcaattcgaccacctaaaataccatc 3437554  T
Q  164 tttcagataacaaaaatctatcaaggcgactcatagaatg 203  Q
    |||||||||||||||||||||| | ||| |||||| ||||    
T  3437553 tttcagataacaaaaatctatctatgcggctcatataatg 3437514  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 17108830 - 17108770
Alignment:
Q  63 cccccaattttgctcatcaactgaaagaactaaagcacaatgatcaaacaaactacgcaac 123  Q
    |||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||||||||    
T  17108830 cccccaattttgctcatcaattgagagaactaaagcaaaatgatcagacaaactacgcaac 17108770  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 15105364 - 15105263
Alignment:
Q  63 cccccaattttgctcatcaactgaaagaactaaagcacaatgatcaaacaaactacgcaactgggccacttgaagataattcggccacctcaaacaccaa 162  Q
    |||||||||||  |||||||||||||  ||||  |||||||||||| |||||| ||| ||||| || ||||||||  |||| |||||||| |||||||||    
T  15105364 cccccaattttattcatcaactgaaatgactattgcacaatgatcagacaaaccacgtaactgtgctacttgaaggcaattgggccaccttaaacaccaa 15105265  T
Q  163 ct 164  Q
    ||    
T  15105264 ct 15105263  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 17099478 - 17099547
Alignment:
Q  145 ggccacctcaaacaccaactttcagataacaaaaatctatcaaggcgactcatagaatgaccatcacctc 214  Q
    ||||| ||||||||||||  ||||||||| |||||||||||||  |||||||| ||||||||||| ||||    
T  17099478 ggccatctcaaacaccaagcttcagataataaaaatctatcaattcgactcatcgaatgaccatcccctc 17099547  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 23876209 - 23876121
Alignment:
Q  96 agcacaatgatcaaacaaactacgcaactgggccacttgaagataattcggccacctcaaacaccaactttcagataacaaaaatctat 184  Q
    ||||||||||| | |||| | ||  ||||||||  | |||||| |||| |||||||| ||||||||||||||||| || ||||||||||    
T  23876209 agcacaatgattagacaagccacataactgggctgcctgaagacaatttggccaccttaaacaccaactttcagacaataaaaatctat 23876121  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 42456100 - 42456038
Alignment:
Q  152 tcaaacaccaactttcagataacaaaaatctatcaaggcgactcatagaatgaccatcacctc 214  Q
    |||||||||| || |||||||| ||||||| ||||| |||||||| ||| | |||||||||||    
T  42456100 tcaaacaccacctgtcagataataaaaatcgatcaatgcgactcacagatttaccatcacctc 42456038  T

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