View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6999_low_3 (Length: 343)
Name: NF6999_low_3
Description: NF6999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6999_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 7751671 - 7751767
Alignment:
| Q |
232 |
aaagggggagtgatagagatcgtggtgataggcgcgatagagatgatacaagaggcaatgctagagatagagataggtatgaaaaagatgataaaag |
328 |
Q |
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| T |
7751671 |
aaagggggagtgatagagatcgtggtgataggcgcgatagagatgatacaagaggcaatgctagagatagagataggtatgaaaaagatgataaaag |
7751767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 7701392 - 7701296
Alignment:
| Q |
232 |
aaagggggagtgatagagatcgtggtgataggcgcgatagagatgatacaagaggcaatgctagagatagagataggtatgaaaaagatgataaaag |
328 |
Q |
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| T |
7701392 |
aaagggggagtgatagagatcgtggtgataggcgcgatagagatgatacaagaggcaatgctagagatagagatagatatgaaaaagatgataaaag |
7701296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7701623 - 7701557
Alignment:
| Q |
1 |
tgaaagagaatgccaattcgaacacgaagtttaaggctttggcgatttcagatgataggggtcgtgc |
67 |
Q |
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| T |
7701623 |
tgaaagagaatgccaattcgaacacgaagtttaaggctttggcgatttcagatgataggggtcgtgc |
7701557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7751440 - 7751506
Alignment:
| Q |
1 |
tgaaagagaatgccaattcgaacacgaagtttaaggctttggcgatttcagatgataggggtcgtgc |
67 |
Q |
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| T |
7751440 |
tgaaagagaatgccaattcgaacacgaagtttaaggctttggcgatttcagatgataggggtcgtgc |
7751506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 7701450 - 7701389
Alignment:
| Q |
267 |
gatagagatgatacaagaggcaatgctagagatagagataggtatgaaaaagatgataaaag |
328 |
Q |
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| T |
7701450 |
gatagatatgatagaagggggaatgatagagatagagataggcgtgaaagagatgataaaag |
7701389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 7751613 - 7751674
Alignment:
| Q |
267 |
gatagagatgatacaagaggcaatgctagagatagagataggtatgaaaaagatgataaaag |
328 |
Q |
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| T |
7751613 |
gatagatatgatagaagggggaatgatagagatagagataggcgtgaaagagatgataaaag |
7751674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 51667510 - 51667550
Alignment:
| Q |
27 |
aagtttaaggctttggcgatttcagatgataggggtcgtgc |
67 |
Q |
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| T |
51667510 |
aagttcaaggctttggcaatttcagatgatagggatcgtgc |
51667550 |
T |
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