View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6999_low_5 (Length: 296)
Name: NF6999_low_5
Description: NF6999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6999_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 39976887 - 39976625
Alignment:
| Q |
18 |
tatttgagtgtcggtgatgttttaggcacagagttacacacttttggttgctacttcactggttttctcactagttctggcttacttgttaagcatagag |
117 |
Q |
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| T |
39976887 |
tatttgagtgtcggtgatgttttaggcacagagttacacacttttggttgctacttcactggttttctcactagttctggcttacttgttaagcatagag |
39976788 |
T |
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| Q |
118 |
cacttaaggagtattttggtgatagaaaacctgatattggaattggaacttcaagtttacatcatcatcttttcatttccacttgcaaggtaagttttaa |
217 |
Q |
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| T |
39976787 |
cacttaaggagtattttggtgatagaaaacctgatattggaattggaacttcaagtttacatcatcatcttttcatatccacttgcaaggtaagttttaa |
39976688 |
T |
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| Q |
218 |
acaa-nnnnnnnnaaagggttggcaaattaaagatatctataaaacatttttgtgtattttctgatgt |
284 |
Q |
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| T |
39976687 |
acaatttttttttaaagggttggc-----aaagatatctataaaacttttttgtgtattttctgatgt |
39976625 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 16193630 - 16193668
Alignment:
| Q |
44 |
cacagagttacacacttttggttgctacttcactggttt |
82 |
Q |
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| T |
16193630 |
cacagagttacacactgttggatgctacttcactggttt |
16193668 |
T |
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