View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6999_low_7 (Length: 237)
Name: NF6999_low_7
Description: NF6999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6999_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 17956292 - 17956073
Alignment:
| Q |
3 |
gtgttggaggaaaaagattaaatttttctttgggagatgagaaagtgaaggagttacattgtctttctactgagctccattctttaactcatatccatac |
102 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17956292 |
gtgttggatgaaaaagattaaatttttctttgggagatgagaaagtgaaggagttacattgtctttctactgagctccatt-tttaactcatatccatac |
17956194 |
T |
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| Q |
103 |
tagtattagttggcaacagtctcgcttacagtggctccgggaaggggatcctaattcaaaatattttcatggtaccatgtctagctggcagcaagttaat |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17956193 |
tagtattagttggcaacagtctcgcttacagtggctccgggaaggggatcctaattcaaaatattttcatggtaccatgtctagccggcagcaagttaat |
17956094 |
T |
|
| Q |
203 |
gctatcacaactattcgtgtg |
223 |
Q |
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| ||||||||||||||||||| |
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| T |
17956093 |
gttatcacaactattcgtgtg |
17956073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 8811490 - 8811558
Alignment:
| Q |
104 |
agtattagttggcaacagtctcgcttacagtggctccgggaaggggatcctaattcaaaatattttcat |
172 |
Q |
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|||||| |||||||||||||||| || |||||| | || ||||||||| | |||||||| | ||||||| |
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| T |
8811490 |
agtatttgttggcaacagtctcgattgcagtggttgcgtgaaggggatgccaattcaaagttttttcat |
8811558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 47421046 - 47420974
Alignment:
| Q |
99 |
atactagtattagttggcaacagtctcgcttacagtggctccgggaaggggatcctaattcaaaatattttca |
171 |
Q |
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| T |
47421046 |
atacaagtatttgttggcagcagtctcgtttaaactggctccgggatggagatgctaattcaaagttttttca |
47420974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 183
Target Start/End: Original strand, 3437891 - 3438046
Alignment:
| Q |
28 |
ttctttgggagatgagaaagtgaaggagttacattgtctttctactgagctccattctttaactcatatccatactagtattagttggcaacagtctcgc |
127 |
Q |
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||||||||||| || ||| ||| ||||| |||||||||| ||| |||||| |||| |||| ||| |||||||| | |||| |||||||||| ||||| |
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| T |
3437891 |
ttctttgggaggtgtgaaggtggaggagctacattgtctctctgttgagcttcattatttatctcggatccataccaatatttgttggcaacaatctcga |
3437990 |
T |
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| Q |
128 |
ttacagtggctccgggaaggggatcctaattcaaaatattttcatggtaccatgtc |
183 |
Q |
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|| | || || |||||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
3437991 |
ttgaattgactttgggaaggggaagctaattcgaaatattttcatggtactatgtc |
3438046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 210
Target Start/End: Original strand, 15105603 - 15105785
Alignment:
| Q |
28 |
ttctttgggagatgagaaagtgaaggagttacattgtctttctactgagctccattctttaactcatatccatactagtattagttggcaacagtctcgc |
127 |
Q |
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||||||||| |||||| | ||| || ||||| ||||||||| | ||||||| |||| ||| ||| ||| | ||||||||| ||||||||| ||| | |
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| T |
15105603 |
ttctttgggtgatgaggaggtggagaagttatattgtctttatgctgagctatattccttatctcggatcaacactagtatttgttggcaacgatcttgt |
15105702 |
T |
|
| Q |
128 |
ttacagtggctccgggaaggggatcctaattcaaaatattttcatggtaccatgtctagctggcagcaagttaatgctatcac |
210 |
Q |
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|| | ||||| | ||||| ||| |||||| ||||||||||||||||| |||||||| |||| || ||||||||| ||||| |
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| T |
15105703 |
ttgaattggcttagcgaaggtgatgctaatttcaaatattttcatggtactatgtctagatggcggcgagttaatgccatcac |
15105785 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 49245822 - 49245748
Alignment:
| Q |
102 |
ctagtattagttggcaacagtctcgcttacagtggctccgggaaggggatcctaattcaaaatattttcatggta |
176 |
Q |
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|||||||| ||||||||||||| ||| | | ||| | ||||||||||| |||||||||||||||||||||||| |
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| T |
49245822 |
ctagtatttgttggcaacagtcgcgcctgaattggttatgggaaggggatgctaattcaaaatattttcatggta |
49245748 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 21412548 - 21412448
Alignment:
| Q |
51 |
aggagttacattgtctttctactgagctccattctttaactcatatccatactagtattagttggcaacagtctcgcttacagtggctccgggaagggga |
150 |
Q |
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||||| ||||| || || ||||||| ||||||||||| | | || || ||||||||| | |||||||||||||| ||||||||| | || |||||||| |
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| T |
21412548 |
aggagctacatggtattactactgacatccattctttatcccggattcacactagtatttgctggcaacagtctcggttacagtggttgcgtgaagggga |
21412449 |
T |
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| Q |
151 |
t |
151 |
Q |
| |
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| |
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| T |
21412448 |
t |
21412448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 4936026 - 4936098
Alignment:
| Q |
99 |
atactagtattagttggcaacagtctcgcttacagtggctccgggaaggggatcctaattcaaaatattttca |
171 |
Q |
| |
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|||| |||||| ||||||| |||||||| ||| | ||||||||||| || ||| |||||||||| | |||||| |
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| T |
4936026 |
atacaagtatttgttggcagcagtctcgtttaaactggctccgggatggagatgctaattcaaagttttttca |
4936098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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