View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6999_low_8 (Length: 237)

Name: NF6999_low_8
Description: NF6999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6999_low_8
NF6999_low_8
[»] chr1 (6 HSPs)
chr1 (1-123)||(12362385-12362524)
chr1 (1-123)||(12378737-12378876)
chr1 (150-220)||(12378591-12378661)
chr1 (150-202)||(12362258-12362309)
chr1 (120-150)||(12362327-12362357)
chr1 (120-150)||(12378679-12378709)


Alignment Details
Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 12362524 - 12362385
Alignment:
Q  1 ccctttgtattaattggatat----tcttgtcttaaaccatatccatatttaattatgttttggaggtatggctaaacttggtcagtcat---------- 86  Q
    |||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||              
T  12362524 ccctttgtattaattggatatatattcttgtcttaaaccatattcatatttaattatgttttggaggtatggctaaacttggttagtcatatttaatgaa 12362425  T
Q  87 ---attcttttcatccaatttttgaaggatttgaaaatat 123  Q
       |||||||||||||||||||||||||||||||||||||    
T  12362424 atcattcttttcatccaatttttgaaggatttgaaaatat 12362385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 12378876 - 12378737
Alignment:
Q  1 ccctttgtattaattggatat----tcttgtcttaaaccatatccatatttaattatgttttggaggtatggctaaacttggtcagtcat---------- 86  Q
    |||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||              
T  12378876 ccctttgtattaattggatatatattcttgtcttaaaccatattcatatttaattatgttttggaggtatggctaaacttggttagtcatatttaatgaa 12378777  T
Q  87 ---attcttttcatccaatttttgaaggatttgaaaatat 123  Q
       |||||||||||||||||||||||||||||||||||||    
T  12378776 atcattcttttcatccaatttttgaaggatttgaaaatat 12378737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 12378661 - 12378591
Alignment:
Q  150 tcgagataaagcgagggaaataagattcgtagagaatgatctcagggaaggactaccttctttgtcatttg 220  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12378661 tcgagatatagtgagggaaataagattcgtagagaatgatctcagggaaggactaccttctttgtcatttg 12378591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 12362309 - 12362258
Alignment:
Q  150 tcgagataaagcgagggaaataagattcgtagagaatgatctcagggaaggac 202  Q
    |||||||| || |||||||||||||||||||||| | ||||||||||||||||    
T  12362309 tcgagatatagtgagggaaataagattcgtagagta-gatctcagggaaggac 12362258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 150
Target Start/End: Complemental strand, 12362357 - 12362327
Alignment:
Q  120 atataagagatatataaagaatatgtagact 150  Q
    |||||||||||||||||||||||||||||||    
T  12362357 atataagagatatataaagaatatgtagact 12362327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 150
Target Start/End: Complemental strand, 12378709 - 12378679
Alignment:
Q  120 atataagagatatataaagaatatgtagact 150  Q
    |||||||||||||||||||||||||||||||    
T  12378709 atataagagatatataaagaatatgtagact 12378679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University