View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7000_high_1 (Length: 647)
Name: NF7000_high_1
Description: NF7000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7000_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 7 - 509
Target Start/End: Original strand, 34408512 - 34409014
Alignment:
| Q |
7 |
tcgaataatataattataatcaagtccgaagcatacgtttctcccgtataattgttactaactgtaataactaactaaatgtagttgaccgagtgatgtt |
106 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408512 |
tcgaataatataattataactaagtccgaagcataagtttctcccgtataattgttactaactgtaataactaactaaatgtagttgaccgagtgatgtt |
34408611 |
T |
|
| Q |
107 |
tagcgaaaaagtagatcgtgttatcacttgtggattaataaagttctatttatagtaatgctcaacctccatataatctccacactttgtggtaacttat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408612 |
tagcgaaaaagtagatcgtgttatcacttgtggattaataaagttctatttatagtaatgctcaacctccatataatctccacactttgtggtaacttat |
34408711 |
T |
|
| Q |
207 |
gacagtacttatggataaattgtaattacaaaagaaaagacacaccagaacacaagctagctactagacctttgaataagttgtaattggttacatcaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408712 |
gacagtacttatggataaattgtaattacaaaagaaaagacacaccagaacacaagctagctactagacctttgaataagttgtaattggttacatcaca |
34408811 |
T |
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| Q |
307 |
ttgttgcattgcaaagatatattgattggaaacatgtcgtcgtcagatgatattgcagcaaggcagaaggccatcgatgattggcttcccgtcactgcct |
406 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34408812 |
ttgttgcattgcaaagatatattgatcggaaacatgtcatcgtcagatgatgttgcagcaaggcagaaggccatcgatgattggcttcccgtcactgcct |
34408911 |
T |
|
| Q |
407 |
cgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttggcgccggcgttctcacccttccttacgccatgtctaagatgggatg |
506 |
Q |
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| T |
34408912 |
cgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttggcgccggcgttctcacccttccttacgccatgtctaagatgggatg |
34409011 |
T |
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| Q |
507 |
gta |
509 |
Q |
| |
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||| |
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| T |
34409012 |
gta |
34409014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 373 - 509
Target Start/End: Complemental strand, 38828053 - 38827917
Alignment:
| Q |
373 |
aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttggcgccggcgttc |
472 |
Q |
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|||||||| |||||||||||||| || ||||| || || || |||||||||||||| || || || |||||| | || ||||||||||| || || |||| |
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| T |
38828053 |
aaggccattgatgattggcttcctgtaactgcttctagaaatgccaaatggtggtattcggcgttccacaatctaacagccatggttggtgctggtgttc |
38827954 |
T |
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| Q |
473 |
tcacccttccttacgccatgtctaagatgggatggta |
509 |
Q |
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| T |
38827953 |
tcagtcttccatatgcaatgtcccatatgggatggta |
38827917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 7980097 - 7980045
Alignment:
| Q |
409 |
aggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg |
461 |
Q |
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||||| || |||||||||||||| |||||||||||| |||| ||||||||||| |
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| T |
7980097 |
aggaatgcaaaatggtggtactcagcttttcacaatgtcactgccatggttgg |
7980045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 461
Target Start/End: Original strand, 43851749 - 43851837
Alignment:
| Q |
373 |
aaggccatcgatgattggcttcccgtcactgcctcgaggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg |
461 |
Q |
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||||| || ||||||||||||||| | ||| | || ||||| || |||||||||||| | |||||||||||| | || ||||||||||| |
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| T |
43851749 |
aaggcaatagatgattggcttcccataacttcttcaaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttgg |
43851837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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