View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7000_high_5 (Length: 329)
Name: NF7000_high_5
Description: NF7000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7000_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 15057509 - 15057578
Alignment:
| Q |
19 |
atcaatctcaaatttctctccctcctttctcactcgcatgtcatgacttcgaaacttgcaagttagatct |
88 |
Q |
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| T |
15057509 |
atcaatctcaaatttctctccctcctttctcactcgcatgtcatgacttcgaaacttgcatgttagatct |
15057578 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 15599072 - 15599005
Alignment:
| Q |
137 |
tcatcgtccaaatcatatgctttgataggcttatactagctttgataggcatcatcatccaaatatta |
204 |
Q |
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| T |
15599072 |
tcatcatccaaatcttatgatttgataggcgtgtattagctttgataggcattatcatgcaaatatta |
15599005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 15610848 - 15610769
Alignment:
| Q |
136 |
atcatcgtccaaatcatatgctttgataggcttatactagctttgataggcatcatcatccaaatattattctttgatag |
215 |
Q |
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| T |
15610848 |
atcatcttctaaatcttatgctttgataggcgtgtagtagatttgataggcattatcatgcaaatcttatgctttaatag |
15610769 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 20806744 - 20806815
Alignment:
| Q |
145 |
caaatcatatgctttgataggcttatactagctttgataggcatcatcatccaaatattattctttgatagg |
216 |
Q |
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| T |
20806744 |
caaatcttatgctttgatacgtgtgtaatagatttgataggcatcatcatccaaatcttatgctttgttagg |
20806815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 20806786 - 20806864
Alignment:
| Q |
136 |
atcatcgtccaaatcatatgctttgataggcttatactagctttgataggcatcatcatccaaatattattctttgata |
214 |
Q |
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| T |
20806786 |
atcatcatccaaatcttatgctttgttaggcctggtctaggtttgatagacattctcatccaaatattatgctttgata |
20806864 |
T |
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