View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7000_low_3 (Length: 500)
Name: NF7000_low_3
Description: NF7000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7000_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 489
Target Start/End: Complemental strand, 31291382 - 31290913
Alignment:
| Q |
15 |
tcaaatttgtccaaaagacaaaatattcatatgataaaatagcattttccaaaccatcagatttgcttttaaaattagcaatatgttgacccaagttaaa |
114 |
Q |
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| T |
31291382 |
tcaaatttgtccaaaa-agacaatattcatatgataaaatagcattttccaaaccatcagatttgcttttaaaattagcaatatgttgacccaagttaaa |
31291284 |
T |
|
| Q |
115 |
ggcattttgcttattcaaaaagaagttaaaagcataatttgtttctttaatattttcacaatatgaagcatttcttttctagcaagattcatacctttca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
31291283 |
ggcattttgcttattcaaaaagaagttaaaagcataatttgtttctttaatattttcacactatgaagcatttcttttgtagcaagattcatacctttca |
31291184 |
T |
|
| Q |
215 |
aaagaaaaatgttgacccaggttaaaggcattttgcttctctaatttttccacactatgaagaatttcctttcacatgcaattctcctctatttaagcct |
314 |
Q |
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| T |
31291183 |
aaaaaaaaatgttgacccatgttaaaggcattttgcttctctaatatttccacactatgaagaatttcctttcacatgcaattctcctctatttaagcct |
31291084 |
T |
|
| Q |
315 |
atcgactcctccttattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaaaatccttacaaaccnnnnnnnttaaactctctc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
31291083 |
atcgactcctccttattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaaaatccttacaaaccaaaaaaattaaa----ctc |
31290988 |
T |
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| Q |
415 |
tctcagtttcaagtttcaatttctaacacttcaaaaaccactttgaaaactgatcaaagaaccaatctttttcat |
489 |
Q |
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| T |
31290987 |
tctcagtttcaagtttcaatttctaacacttcaaaaaccactttgaaaactgatcaaagaaccaatctttttcat |
31290913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 286 - 382
Target Start/End: Original strand, 39838685 - 39838784
Alignment:
| Q |
286 |
tcacatgcaattctcctctatttaagcctatcgactcctcct---tattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaaa |
382 |
Q |
| |
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|||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| ||||| ||| |||||| |||||||||| ||||||||| |
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| T |
39838685 |
tcacatgcaattctcctctatttaagcccttcaactcctcctctttattcattcaatccattactcacattatcaattctataaaccaaacttcatcaaa |
39838784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 383
Target Start/End: Original strand, 31289665 - 31289765
Alignment:
| Q |
286 |
tcacatgcaattctcctctatttaagcctatcgactc---ctccttattcattcaatccaacactcatattctcaatttcataaaccaaagttcatcaaa |
382 |
Q |
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|||| |||||||||||| ||||||| || || |||| || |||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||| |
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| T |
31289665 |
tcacttgcaattctcctttatttaaacccttcaactccttcttcttattcattgaatccaacactcacattctcaattacataaatcaaagttcatcaaa |
31289764 |
T |
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| Q |
383 |
a |
383 |
Q |
| |
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| |
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|
| T |
31289765 |
a |
31289765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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