View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7000_low_4 (Length: 376)
Name: NF7000_low_4
Description: NF7000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7000_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 38928192 - 38928540
Alignment:
| Q |
22 |
aggctaatattaattgaccctttactaatttctgcttccaagcacaagtgtgaaaataaggaataaaaaagaacatcaacgattagtagaaaagaaaagt |
121 |
Q |
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| T |
38928192 |
aggctaatattaattgaccctttactaatttctgcttccaagcacaagtgtgaaaataaggaataaaaaagaacatcaacgattagtagaaaagaaaagt |
38928291 |
T |
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| Q |
122 |
ggggcaagtaatacaaaaacttattaatacttttcaaattcttcatatagttcacaccatcatcatctttccaaattaaattaacatcacacagcagtga |
221 |
Q |
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| T |
38928292 |
ggggcaagtaatacaaaaacttattaatacttttcaaattcttcatatagttcacaccatcatcatctttccaaattaaattaacatcacacagtagtga |
38928391 |
T |
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| Q |
222 |
tttccatttccattctatacaatagtattaaaaaagacatgacattataaatactaatacagatttaggagcaagcatgattagccaaggagaaatgttt |
321 |
Q |
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| T |
38928392 |
tttccatttccattctatacaatagtattaaaaaagacatgacattataaatactaatacagatttaggagcaagcatgattagccaaggagaaatgttt |
38928491 |
T |
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| Q |
322 |
ggcttgagaagcagcagcaacctcagaaacaaaaccttgcaacaccaaa |
370 |
Q |
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| T |
38928492 |
ggcttgagaagcagcagcaacctcagaaacaaaaccttgcatcaccaaa |
38928540 |
T |
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