View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7001_low_1 (Length: 412)
Name: NF7001_low_1
Description: NF7001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7001_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 380
Target Start/End: Original strand, 51212518 - 51212884
Alignment:
| Q |
14 |
atggacatctaatctgcatttcctgaactttcctatgctgtttaacgtattgatatctgcttgaggatatttaaaccagtgatcgtatgatttcttgagg |
113 |
Q |
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| T |
51212518 |
atggacatctaatctgcatttcctgaactttcctatgctgtttaatgtattgatatctgcttgaggatatttaaaccagtgatcgtatgatttcttgagg |
51212617 |
T |
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| Q |
114 |
ttatctcaattactactactctgcaggtttcacaatgttctttgagggacctacttttgcaatgttgtactgatgatgctcacgatgttcgccaaagtgc |
213 |
Q |
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| T |
51212618 |
ttatctcaattactactactctgcaggtttcacaatgttctttgagggacctactgttgcaatgttgtactgatgatgctcacgatgttcgccaaagtgc |
51212717 |
T |
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| Q |
214 |
atttgccttacttggagaccttgctcgagtaagtttaatgtgtatttgcatactttatactgaagccctcacatgcactgcctatggtaattaaacacag |
313 |
Q |
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| T |
51212718 |
atttgccttacttggagaccttgctcgagtaagtttaatttgtatttgcatactttatactgaagccctcccatgcactgcctatggtaatcaaacacag |
51212817 |
T |
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| Q |
314 |
gatgattccacaagctgacccttgtatatttttgaaagtaaattgggttagcttttggaggcagatc |
380 |
Q |
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| T |
51212818 |
gattattccacaagctgacccttgtatatttttgaaagtaaattgggttagcttttggaggcagatc |
51212884 |
T |
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