View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7001_low_2 (Length: 388)
Name: NF7001_low_2
Description: NF7001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7001_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 38991367 - 38990990
Alignment:
| Q |
1 |
gagcaccctcttctaagagatctcggggcagaccaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatgaa |
100 |
Q |
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|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38991367 |
gagcaccctcctctaagagatctcgtggcagaccaaagggctccaaaaacaagcccaagacacctgcggtggttatggtagagcctcaaacattaatgaa |
38991268 |
T |
|
| Q |
101 |
acaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38991267 |
acaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggtttt |
38991168 |
T |
|
| Q |
201 |
ggtattgtctctgacatcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgacgtctctctctggcacttatg |
300 |
Q |
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| T |
38991167 |
ggtattgtctctgacatcaccattcacagctcgttatctcataccccaccactcactattgaaggacctgtccaaatgacgtctctctctggcacttatg |
38991068 |
T |
|
| Q |
301 |
tcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctg |
378 |
Q |
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| T |
38991067 |
tcaatcccaatgttgataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctg |
38990990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 38954422 - 38954785
Alignment:
| Q |
15 |
aagagatctcggggcagaccaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattg |
114 |
Q |
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| T |
38954422 |
aagagatcaaggggtagatcaaagggctccaaaaataaacccaaacccccagtggtgatcaccgtagagcctgaaagttttatgaaacaaatttttatcg |
38954521 |
T |
|
| Q |
115 |
aaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggttctggtattgtctctga |
214 |
Q |
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|||| | ||||| | ||||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||| ||| |||||||| | |
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| T |
38954522 |
aaatatcagctggatgtgatgttgtggagtccatcatcaagatggcttggcgtcatcaagctgatatctcagtaatgagaggttccggtcttgtctctaa |
38954621 |
T |
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| Q |
215 |
catcaccattcacaactcgttatcccataccccaccactcactattgaaggacctgtccaaatgacgtctctctctggcacttatgtcaatcccaatgtt |
314 |
Q |
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| T |
38954622 |
tattaccatccgtaactcgacatctcattcccctgcactaactattgaaggacccatcaaaatgatgtctctctctggcacttacatcaatcccaattct |
38954721 |
T |
|
| Q |
315 |
gataatgttccttctgaagtcattgccaaccctgcatgttcttcttttagcattttcctctctg |
378 |
Q |
| |
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|||| ||||||||||||| |||| |||||||| ||||||||||||||||||||| |||| |
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| T |
38954722 |
gatactgttccttctgaattcatcaccaaccctaaccattcttcttttagcattttcctatctg |
38954785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 18528173 - 18528036
Alignment:
| Q |
60 |
ccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatgg |
159 |
Q |
| |
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||||||| |||| |||||||||||||| |||| ||| |||||||||| |||||| |||||||| || |||||||||| |||||||||||||||| ||| |
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| T |
18528173 |
ccacctgtggtgattatggtagagcctgaaacctta-tgaaacaaatttttattaaaatccctattgagtatgatgttgtggagtccatcatcaaaatga |
18528075 |
T |
|
| Q |
160 |
cttggcgtcatgaagctgacatcacagtgctgagaggtt |
198 |
Q |
| |
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||||||| || |||| |||||| ||||||||||||||| |
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| T |
18528074 |
attggcgttatcaagcagacatctcagtgctgagaggtt |
18528036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 18527758 - 18527925
Alignment:
| Q |
32 |
accaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtat |
131 |
Q |
| |
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||||||||||| ||| ||||| ||||| ||| || |||| | |||||||| || |||| || ||||||| ||| |||||||||||| ||||| ||| |
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| T |
18527758 |
accaaagggctacaagaacaaacccaaaccatatgtggtgatcatggtagatcccaaaacttttatgaaactaatttttattgaaatctctgctatatat |
18527857 |
T |
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| Q |
132 |
gatgttttggagtccatcatcaagatggcttggcgtcatgaagctgacatcacagtgctgagaggttc |
199 |
Q |
| |
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||| || |||| ||||||||| |||||||||||| ||| || |||||| | ||| |||||||||| |
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| T |
18527858 |
gattttatggaaaccatcatcaggatggcttggcgacatctagatgacatatctgtgatgagaggttc |
18527925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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