View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7001_low_3 (Length: 308)
Name: NF7001_low_3
Description: NF7001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7001_low_3 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 38991489 - 38991182
Alignment:
| Q |
1 |
tgcatcctcaggcagttcctctgccatagtgggagaaataatagggcactcaacctctctccccaacactaccacaacaaacaataacaatgaacagttg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38991489 |
tgcaccctcaggcagttcctctgccatagtgggagaaataatagggcactcaacctctctccccaacactacaacaacaaacaataacaatgaacagttg |
38991390 |
T |
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| Q |
101 |
gttatgccaacatcaccaccaagagcaccctcttctaagagatctcggggcagaccaaagggctccaaaaacaagcccaagccacctgcggtggttatgg |
200 |
Q |
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| T |
38991389 |
gttatgccaacatcaccaccaagagcaccctcctctaagagatctcgtggcagaccaaagggctccaaaaacaagcccaagacacctgcggtggttatgg |
38991290 |
T |
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| Q |
201 |
tagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctga |
300 |
Q |
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| T |
38991289 |
tagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctga |
38991190 |
T |
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| Q |
301 |
catcacag |
308 |
Q |
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| T |
38991189 |
catcacag |
38991182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 300
Target Start/End: Original strand, 38954422 - 38954585
Alignment:
| Q |
137 |
aagagatctcggggcagaccaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattg |
236 |
Q |
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| T |
38954422 |
aagagatcaaggggtagatcaaagggctccaaaaataaacccaaacccccagtggtgatcaccgtagagcctgaaagttttatgaaacaaatttttatcg |
38954521 |
T |
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| Q |
237 |
aaatccctgctgggtatgatgttttggagtccatcatcaagatggcttggcgtcatgaagctga |
300 |
Q |
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| T |
38954522 |
aaatatcagctggatgtgatgttgtggagtccatcatcaagatggcttggcgtcatcaagctga |
38954585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 18528173 - 18528052
Alignment:
| Q |
182 |
ccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtatgatgttttggagtccatcatcaagatgg |
281 |
Q |
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| T |
18528173 |
ccacctgtggtgattatggtagagcctgaaacctta-tgaaacaaatttttattaaaatccctattgagtatgatgttgtggagtccatcatcaaaatga |
18528075 |
T |
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| Q |
282 |
cttggcgtcatgaagctgacatc |
304 |
Q |
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| T |
18528074 |
attggcgttatcaagcagacatc |
18528052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 18527586 - 18527673
Alignment:
| Q |
34 |
agaaataatagggcactcaacctctctccccaacactaccacaacaaacaataacaatgaacagttggttatgccaacatcaccaccaaga |
124 |
Q |
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| T |
18527586 |
agaaatgataggacacacaacttctctccccaacaccaccacaa---acattagcaatgaaaagttggttttgccaacatcaccaccaaga |
18527673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 288
Target Start/End: Original strand, 18527758 - 18527892
Alignment:
| Q |
154 |
accaaagggctccaaaaacaagcccaagccacctgcggtggttatggtagagcctcaaacattaatgaaacaaatatttattgaaatccctgctgggtat |
253 |
Q |
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| T |
18527758 |
accaaagggctacaagaacaaacccaaaccatatgtggtgatcatggtagatcccaaaacttttatgaaactaatttttattgaaatctctgctatatat |
18527857 |
T |
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| Q |
254 |
gatgttttggagtccatcatcaagatggcttggcg |
288 |
Q |
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| T |
18527858 |
gattttatggaaaccatcatcaggatggcttggcg |
18527892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 18528339 - 18528271
Alignment:
| Q |
71 |
accacaacaaacaataacaatgaacagtt-ggttatgccaacatcaccacca-agagcaccctcttcta |
137 |
Q |
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||||| ||||||| |||||||||| |||| |||||||||||||| ||||||| |||||||||| |||| |
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| T |
18528339 |
accaccacaaacattaacaatgaaaagttaggttatgccaacataaccaccagggagcaccctcctcta |
18528271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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