View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7001_low_4 (Length: 306)
Name: NF7001_low_4
Description: NF7001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7001_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 28021035 - 28021312
Alignment:
| Q |
18 |
gtatgtgcttgaaaaactgcacacttagtataatacaaattacaaaccttcactctacaatccagtccacatcatttgaggtcatttataacnnnnnnnn |
117 |
Q |
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| T |
28021035 |
gtatgtgcttgaaaaactgcacacttagtataatacaaattacaaaccttcactctacaatccagtccacatcatttgaggtcatttataacaaagaaaa |
28021134 |
T |
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| Q |
118 |
cggctccatttattatacttgtcagttaccacaattcaaggagttgttttataagggtcgtgaaattttcgggaagcttgttttcgctaaaactagcatt |
217 |
Q |
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| T |
28021135 |
cggctccatttattatacttgtcagttaccacaattcaaggagttgttttataagggtcgtgaaattttcgagaagcttgttttcgctaaaactagcatt |
28021234 |
T |
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| Q |
218 |
ttcctattataaattttaatgaaaattttaaaattatatgttcgctcgcgcaacatgcaattccgaatctagtttctt |
295 |
Q |
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| T |
28021235 |
ttcctattataaattttaatgaaaattttaaaattatacgttcgctcgcgcaacatgcaattctgaatctagtttctt |
28021312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 29348075 - 29348158
Alignment:
| Q |
119 |
ggctccatttattatacttgtcagttaccacaattcaaggagttgttttataagggtcgtgaaattttcgggaagcttgttttcg |
203 |
Q |
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| T |
29348075 |
ggctccatttattataattggcagttaccacaattcaagg-gttgttttataaaggtcgtaaaaatctcgggaagcttgttttcg |
29348158 |
T |
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