View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7001_low_9 (Length: 246)
Name: NF7001_low_9
Description: NF7001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7001_low_9 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 24564915 - 24564682
Alignment:
| Q |
1 |
gtggggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaactttcatgttctttcttctccatttcaggaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564915 |
gtggggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaactttcatgttctttcttctccatttcaggaaag |
24564816 |
T |
|
| Q |
101 |
gtatatagtgctcttctctcaacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttattagtccgtggtagcagactcacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24564815 |
gtatatagtgctcttctctcaacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttattagtccgtggtagcagactcacca |
24564716 |
T |
|
| Q |
201 |
ttcttgaagaggtcaaggtattggatcacacagg |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
24564715 |
ttcttgaagaggtcaaggtattggatcacacagg |
24564682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 45533143 - 45533349
Alignment:
| Q |
5 |
ggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaactttcatgttctttcttctccatttcaggaaaggtat |
104 |
Q |
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|||||||||||||| ||||| |||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||| | |||||||| |
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| T |
45533143 |
ggggccaagtttctaactggaagatggcggtgattatgctatgctaacgtatagacgagaaaactttgatgttctttcttctctatttctgaaaaggtat |
45533242 |
T |
|
| Q |
105 |
atag--tgctcttctctcaacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttattagtccgtggtagcagactcaccatt |
202 |
Q |
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||| ||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
45533243 |
atatactgctcttctctcagtatgtaaatatttttgtctaagtcacatcttttttctgttcttatttgttttattagtccatggcagcaaactcaccatt |
45533342 |
T |
|
| Q |
203 |
cttgaag |
209 |
Q |
| |
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||||||| |
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| T |
45533343 |
cttgaag |
45533349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 44335954 - 44336113
Alignment:
| Q |
24 |
ggagatggtggtggacgtgctatgctaacgtatcgacgagaaaact---ttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctc |
120 |
Q |
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||||||| |||||||||||||||||||||||| || ||||||||| || | |||||||||||| |||||||||||||||||| ||||||||| || |
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| T |
44335954 |
ggagatgatggtggacgtgctatgctaacgtagagatgagaaaactaatttactattctttcttctctatttcaggaaaggtatattctgctcttctttc |
44336053 |
T |
|
| Q |
121 |
aacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttattagt |
180 |
Q |
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|| |||||||||||||||| |||||||||| || ||| |||| ||||||||||||||||| |
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| T |
44336054 |
aatatgtaaatatttttgtttgggttacattttgtttatgtttttatttgttttattagt |
44336113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 44339020 - 44338865
Alignment:
| Q |
24 |
ggagatggtggtggacgtgctatgctaacgtatcgacgagaaaact---ttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctc |
120 |
Q |
| |
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|||||||| ||||||||||||||||||||||| || ||||||||| || |||||||||||||| |||||| |||||||||||| ||||||||| || |
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| T |
44339020 |
ggagatggcggtggacgtgctatgctaacgtagagatgagaaaactaatttactgttctttcttctctatttcaagaaaggtatatactgctcttctttc |
44338921 |
T |
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| Q |
121 |
aacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttatt |
177 |
Q |
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|| |||||||||||||| | |||||||||| || ||| ||||||||||||||||||| |
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| T |
44338920 |
aatatgtaaatatttttatttgggttacat-ttgtttatgttcttatttgttttatt |
44338865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 40389524 - 40389688
Alignment:
| Q |
62 |
agaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctc---aacatgtaaatatttttgtctgggttacatcttttt-t |
157 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| || || ||| | |||||||| ||||||||| ||||| | |
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| T |
40389524 |
agaaaactttcatgttctttcttctc---ttcagaaaaggtagatactgctcttctctcaataagatataagtctttttgtccgggttacatttttttat |
40389620 |
T |
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| Q |
158 |
ctgttcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtcaaggtattgga |
225 |
Q |
| |
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|| ||||||| || ||||| |||| ||||||||||| |||||||||||| ||||||||| ||||||| |
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| T |
40389621 |
ctattcttatatg-gctattatgtccatggtagcagacacaccattcttgatgaggtcaagatattgga |
40389688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 29633594 - 29633757
Alignment:
| Q |
62 |
agaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctc---aacatgtaaatatttttgtctgggttacatcttttt-t |
157 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| | ||| || ||||||||| || |||||| | ||||||| ||||||||| ||||| | |
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| T |
29633594 |
agaaaactttcatgttctttcttctc---ttcagaaaaggcagatattgttcttctctcaataagatgtaagtctttttgttcgggttacatttttttat |
29633690 |
T |
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| Q |
158 |
ctgttcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtcaaggtattgga |
225 |
Q |
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|| |||||||||| ||||| ||| ||||||||||| | |||||||||| ||||||||| ||||||| |
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| T |
29633691 |
ctattcttatttg-gctattacgtctatggtagcagacac-ccattcttgatgaggtcaagatattgga |
29633757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 23096051 - 23095887
Alignment:
| Q |
63 |
gaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctcaacatgtaaatatttttgtctgggttacatcttttttc-tgt |
161 |
Q |
| |
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|||| ||| |||||||||||||||| |||||||||||||||||| | || ||||||||| |||||||| ||||||||| ||||||| |||| | ||| |
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| T |
23096051 |
gaaatcttccatgttctttcttctctctttcaggaaaggtatatacttctattctctcaatatgtaaatctttttgtctaggttacaatttttaacatgt |
23095952 |
T |
|
| Q |
162 |
tcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtca-aggtattgg |
224 |
Q |
| |
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| |||||||||||||| ||| |||||||||||| | |||||||||| || |||| ||||||||| |
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| T |
23095951 |
ttatatttgttttattatgtcggtggtagcagacacgccattcttgatgatgtcataggtattgg |
23095887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 83284 - 83448
Alignment:
| Q |
62 |
agaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctcaaca---tgtaaatatttttgtctgggttacatcttttt-t |
157 |
Q |
| |
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|||||||||| ||||||||||||||| ||||| ||||||| ||| || ||||||||||| | ||||| ||||||||| ||||||||| ||||| | |
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| T |
83284 |
agaaaacttttatgttctttcttctc---ttcagaaaaggtagatattgttcttctctcaataagatgtaagtatttttgttcgggttacatttttttct |
83380 |
T |
|
| Q |
158 |
ctgttcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtcaaggtattgga |
225 |
Q |
| |
|
|| |||||||||| | |||| |||| ||||||||||| |||||||| ||| ||||||||| ||||||| |
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| T |
83381 |
ctattcttatttggct-attatgtccatggtagcagacacaccattcatgatgaggtcaagatattgga |
83448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 225
Target Start/End: Original strand, 48279680 - 48279844
Alignment:
| Q |
62 |
agaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctc---aacatgtaaatatttttgtctgggttacatcttttt-t |
157 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| || ||||| | ||||||| |||||| || ||||| | |
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| T |
48279680 |
agaaaactttcatgttctttcttctc---ttcagaaaaggtagatactgctcttctctcaataagatgtaggtctttttgttcgggttatatttttttat |
48279776 |
T |
|
| Q |
158 |
ctgttcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtcaaggtattgga |
225 |
Q |
| |
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|| |||||||||| ||||| |||| |||||||||| |||||||||||| ||||||||| ||||||| |
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| T |
48279777 |
ctattcttatttg-gctattatgtccagggtagcagacacaccattcttgatgaggtcaagatattgga |
48279844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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