View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7002_high_15 (Length: 252)
Name: NF7002_high_15
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_high_15 |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 13218406 - 13218366
Alignment:
| Q |
212 |
actgcaataattcttgctaagaagaatgcccacgttgtggc |
252 |
Q |
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| T |
13218406 |
actgcaataattcttgctaagaagaatgcccacgttgtggc |
13218366 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 3159103 - 3159007
Alignment:
| Q |
49 |
ttgccaaaccaggaagaagacaacgaaacaacaattttaattatgtcaagaaattcaatgcaggtttgatgatcaatacagataataaattattaaca |
146 |
Q |
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| T |
3159103 |
ttgctaaaccaggaagatggcaaccaa-caacaatcatatttatgtcaagaaattcaatttaggtttgacaatcgatactgataataaattatgaaca |
3159007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 2876281 - 2876380
Alignment:
| Q |
49 |
ttgccaaaccaggaagaagacaacgaaacaacaattttaattatgtcaagaaattcaatgcaggtttgatgatcaatacagataataaattattaacaca |
148 |
Q |
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| T |
2876281 |
ttgctaaaccaggaagatggcaacgaaacaactatcatatttatgtcaagaaatttaatttaggtttgacaatagatacagattataaataatgaacaca |
2876380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 2795452 - 2795384
Alignment:
| Q |
49 |
ttgccaaaccaggaagaagacaacgaaacaacaattttaattatgtcaagaaattcaatgcaggtttga |
117 |
Q |
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| T |
2795452 |
ttgctaaaccaggaagatggcaaccaaataacaatcatatttatgtcaagaaattcaatttaggtttga |
2795384 |
T |
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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 239303 - 239343
Alignment:
| Q |
212 |
actgcaataattcttgctaagaagaatgcccacgttgtggc |
252 |
Q |
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| T |
239303 |
actgcaataattctcgctaagaagaatgcccatgtcgtggc |
239343 |
T |
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