View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7002_high_17 (Length: 217)
Name: NF7002_high_17
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 30253013 - 30252825
Alignment:
| Q |
11 |
aagaatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaaagca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30253013 |
aagaatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctatgagatcatatccaaagca |
30252914 |
T |
|
| Q |
111 |
gcatcaatggagattcccaacnnnnnnnnggttaaatgaaacaatctatggagaaagagagggacaaatgaaggtttcaatgccattat |
199 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30252913 |
gcatcaatggagattcccaacaaaaaaaaggttaaatgaaacaatctgtggagaaagagagggacaaatgaaggtttcaatgccattat |
30252825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 30259465 - 30259278
Alignment:
| Q |
11 |
aagaatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaaagca |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30259465 |
aagaatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctatgagatcatatccaaagca |
30259366 |
T |
|
| Q |
111 |
gcatcaatggagattcccaacnnnnnnnnggttaaatgaaacaatctatggagaaagagagggacaaatgaaggtttcaatgccattat |
199 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30259365 |
gcatcaatggagattcccaacaaaaaaaagattaaatg-aacaatctatggagaaagagagggaccaatgaaggtttcaatgccattat |
30259278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 30268519 - 30268404
Alignment:
| Q |
11 |
aagaatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaaagca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| || ||||| ||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
30268519 |
aagaatattaagaattactttgaaaacacagaaaggttttattgatgagcaaaagtttaagttttgcatggtaagagcctttgaggtcatatccaa---g |
30268423 |
T |
|
| Q |
111 |
gcatcaatggagattccca |
129 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
30268422 |
gcatcaatggagattccca |
30268404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 30283669 - 30283784
Alignment:
| Q |
11 |
aagaatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaaagca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| || ||||| ||||| ||||||| ||||||||||||| |||||||||| |
|
|
| T |
30283669 |
aagaatattaagaattactttgaaaacacagaaaggttttattgatgagcaaaagtttaagttttgcatggtaagagcctttgaggtcatatccaa---g |
30283765 |
T |
|
| Q |
111 |
gcatcaatggagattccca |
129 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
30283766 |
gcatcaatggagattccca |
30283784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 30302207 - 30302112
Alignment:
| Q |
11 |
aagaatattaagaattactttgaaaacacagaaagacttaattgatgaacagaagttcaagttgtgcatggcaagagcctttgagatcatatccaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
30302207 |
aagaatattaagaattactttgaaaacacaaaaagggtttattgatgagcagaagttcaagttgtgcatagtaagagcctttgaggtcatatccaa |
30302112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University