View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7002_high_2 (Length: 655)
Name: NF7002_high_2
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 55386114 - 55386424
Alignment:
| Q |
17 |
aattctcactcaataacaaattgagtagggataattgaaacaaagttctcgtcatttatttcaaacatccccgacgcatgcaaccaggtctatcaaacat |
116 |
Q |
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| T |
55386114 |
aattctcactcaataacaaattgagtagggataattgaaacaaagttctcgtcatttatttcaaacatccc-gacgcatgcaaccaggtctatcaaacat |
55386212 |
T |
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| Q |
117 |
atatgttaccgtgaatcacctctagcaaatag-----cagtcaaaaccaaatgttttgccttcaacataggagatatcacttatgcatccaggtggttag |
211 |
Q |
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| T |
55386213 |
atatgttaccgtgaatcacctctagcaaatagcatagcagtcaaaaccaaatgttttgacttcaacataggagatatcacttatgcatccaggtggttag |
55386312 |
T |
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| Q |
212 |
ttagtttagctggtggctgcgccatggccctaacctagggggttcaaacttttgagttttccgacctttcgagctaatagtgcnnnnnnntaaattagag |
311 |
Q |
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| T |
55386313 |
ttagtctagctggtggct--gccatggccctaacctagggggttcaaacttttgagttttccgacctttcgagctaatagtgcaaaaaaataaattagag |
55386410 |
T |
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| Q |
312 |
gttcaaaatgtaaa |
325 |
Q |
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| T |
55386411 |
gttcaaactgtaaa |
55386424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 447 - 643
Target Start/End: Original strand, 55386546 - 55386734
Alignment:
| Q |
447 |
caaagtagcataatgggaactatgatacaactttgaaattttgaaattgttagtgggaataggatatgtgcatggcatgcctcgcacggcaggagaccat |
546 |
Q |
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| T |
55386546 |
caaagtagcataatgggaactatcatacaactttgaaattttgaaattgttggtgggaataggatgtgtgcatggcatgcctcgcacggcaggagaccat |
55386645 |
T |
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| Q |
547 |
ttttccatgtcgaatgagattttgcaatattaaagtcaataagtcattgtccctgaacattagtattatgcaaagtacccatttgtaaccatcacag |
643 |
Q |
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| T |
55386646 |
ttttccatgtcgaatgagattttgcaatatta--------aagtcattgtccctgaacattagtattatgcaaagtacccatttgtaaccatcacag |
55386734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 47566185 - 47566241
Alignment:
| Q |
110 |
caaacatatatgttaccgtgaatcacctctagcaaatagcagtcaaaaccaaatgtt |
166 |
Q |
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|||| ||||||||| || |||||||||||| |||||| | |||| |||||||||||| |
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| T |
47566185 |
caaaaatatatgttgccatgaatcacctctggcaaatggaagtcgaaaccaaatgtt |
47566241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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