View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7002_high_3 (Length: 562)
Name: NF7002_high_3
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 7 - 455
Target Start/End: Complemental strand, 1071111 - 1070663
Alignment:
| Q |
7 |
ttggtgttgtgaattttgcaacatcaataccattacttcgaatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccattcggctgata |
106 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1071111 |
ttggtggtgtgaattttgcaacatcaataccattacttcgaatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccatttggctgata |
1071012 |
T |
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| Q |
107 |
aactgttgagaataacatggaaaattagcatacaatgagtgtatacatcacaagcatgagaacatttatgtgtgatagttaaaaatcagaatgtagtttc |
206 |
Q |
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| T |
1071011 |
aactgttgagaataacatggaaaattagcatacaatgagtgtgtacatcacaagcatgagaacatttatgtgtgatagttaaaaatcagaatgtagtttc |
1070912 |
T |
|
| Q |
207 |
cccttaataatactcaataacaacaagctcacactccattcaaacccattttaatgtaagcagtttaattgattgatgccataagtatattttcacaaca |
306 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1070911 |
cccttaataatactcgataacaacaatctcacactccattcaaacccattttaatgtaagcagtttaattgattgatgccataagtatattttcacaaca |
1070812 |
T |
|
| Q |
307 |
ggttgacaacaaaggcaacgtgacacataacacatttattaaccaaaagtcagtttagcttgcgctgctcactacttacaaattgatcattcaattttcc |
406 |
Q |
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| T |
1070811 |
ggttgaaaacaaaggcaacgtgacacataacacatttattaaccaaaagtcagtttagcttgcgctgctcactacttacaaattgatcattcaattttcc |
1070712 |
T |
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| Q |
407 |
tcgcttaaggtaatatgtgcatcctactgtcctagtatatatcatatca |
455 |
Q |
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| T |
1070711 |
tcgcttaaggtaatatgtgcatcctactgtcctagtatatatcatatca |
1070663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 462 - 545
Target Start/End: Complemental strand, 1070579 - 1070496
Alignment:
| Q |
462 |
ggttcaaataaacataattccccatttatattttatgtcatgttaaatctatattacgactgttgcaaagaaaaacgaactcct |
545 |
Q |
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| T |
1070579 |
ggttcaaataaacataattccccatttatattttatgtcatgttaaatctatattacgactgttgcaaagaaaaacgaactcct |
1070496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 1058301 - 1058205
Alignment:
| Q |
14 |
tgtgaattttgcaacatcaataccattacttcgaatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccattcggctgataaact |
110 |
Q |
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| T |
1058301 |
tgtgaattctgcgacatcaataccattacttcgaagttgtggtgtgagtggcttgtctgtaggagatattggtgcctgtccattcggctgaaaaact |
1058205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 1065365 - 1065267
Alignment:
| Q |
14 |
tgtgaattttgcaacatcaataccattacttcgaatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccattcggctgataaactgt |
112 |
Q |
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| T |
1065365 |
tgtgaattttgcaatattaaaaccattacttcgaatttgtggtgtgagtgacttgtctgtagatgatattggtgcctgtccatttggctgaaaaactgt |
1065267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 133
Target Start/End: Original strand, 1641159 - 1641285
Alignment:
| Q |
7 |
ttggtgttgtgaattttgcaacatcaataccattacttcgaatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccattcggctgata |
106 |
Q |
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|||||| |||||| || || | |||||| ||||| |||||| |||||||||| |||| | ||| ||||||||||||||||| |||||||| || ||||| |
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| T |
1641159 |
ttggtggtgtgaacttagctatatcaatgccattgcttcgagtttgtggtttgagtgacatgttagtagaagatattggtgcctgcccatttggttgata |
1641258 |
T |
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| Q |
107 |
aactgttgagaataacatggaaaatta |
133 |
Q |
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| T |
1641259 |
acctgttcagaataatatggaagatta |
1641285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 1046289 - 1046177
Alignment:
| Q |
30 |
tcaataccattacttcgaatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccattcggctgataaactgttgagaataacatggaaa |
129 |
Q |
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||||||||||| | || |||| ||||| | ||| | |||||||||||||||||||||||||| ||||| || |||||||||| | ||||| | ||||||| |
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| T |
1046289 |
tcaataccattgcctccaattcgtggtgtgagtagtttgtctgtagaagatattggtgcttgtccatttggttgataaactggttagaattatatggaaa |
1046190 |
T |
|
| Q |
130 |
attagcatacaat |
142 |
Q |
| |
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|| || ||||||| |
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| T |
1046189 |
atgagaatacaat |
1046177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 1033339 - 1033272
Alignment:
| Q |
60 |
agtggcttgtctgtagaagatattggtgcttgcccattcggctgataaactgttgagaataacatgga |
127 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||| |||||||| ||| || ||||||||||||||||||| |
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| T |
1033339 |
agtgacttgtctgtagaagatatcggttcttgtccattcggttgaaaacctgttgagaataacatgga |
1033272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 1049995 - 1049941
Alignment:
| Q |
60 |
agtggcttgtctgtagaagatattggtgcttgcccattcggctgataaactgttg |
114 |
Q |
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| T |
1049995 |
agtgacttgtttgtagaagatatcggtgcttgtccattcggctgataaactgttg |
1049941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 1043731 - 1043681
Alignment:
| Q |
60 |
agtggcttgtctgtagaagatattggtgcttgcccattcggctgataaact |
110 |
Q |
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| T |
1043731 |
agtgacttgtccgtagaagatatcggtgcttgtccatttggctgataaact |
1043681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 1052932 - 1052867
Alignment:
| Q |
47 |
aatttgtggttttagtggcttgtctgtagaagatattggtgcttgcccattcggctgataaactgt |
112 |
Q |
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|||||||||| | ||| | |||| ||| ||||||||||||||||||||||| || ||| ||||||| |
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| T |
1052932 |
aatttgtggtgtgagtagtttgtttgttgaagatattggtgcttgcccatttggttgacaaactgt |
1052867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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