View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7002_high_8 (Length: 347)
Name: NF7002_high_8
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_high_8 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 13218378 - 13218068
Alignment:
| Q |
1 |
cccacgttgtggcaattccacccagaaggtaatgggttactcctacagcacgtccctgtacaatgctcaaggctctaggctgagtagcaggagcaacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13218378 |
cccacgttgtggcaattccacccagaaggtaatgggttactcctacagcacgtccctgtacaatgctcaaggctctaggctgagtagcaggagcaacttt |
13218279 |
T |
|
| Q |
101 |
taatttattatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgggca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13218278 |
taatttattatgagcccaaacgatggattcaataagttcttgccaataaccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgggca |
13218179 |
T |
|
| Q |
201 |
cctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccataagaaatcgcggagccacccattaatgg |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13218178 |
cctaagaaaaaaagaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccataagaaatcgcggagccacccattaatgg |
13218079 |
T |
|
| Q |
301 |
taatcgaactc |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
13218078 |
taatcgaactc |
13218068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 98 - 259
Target Start/End: Original strand, 54180853 - 54181014
Alignment:
| Q |
98 |
ttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54180853 |
ttttaatttattatgagcccaaacgatggattcaataagttcttgccaataaccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgg |
54180952 |
T |
|
| Q |
198 |
gcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaattacctggga |
259 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54180953 |
gcacctaagaaaaaaagaccatatgcagataatgaggaaccataagactgaattacctggga |
54181014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 311
Target Start/End: Original strand, 45172776 - 45172894
Alignment:
| Q |
188 |
tacaaaatgggcacctaagnnnnnnngaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccataagaaatcgcggagc |
287 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||| |||||| |
|
|
| T |
45172776 |
tacaaaatggccacctaagaaaaaaagaccatatgcagattatgaggaaccataagactg-----ctcgggatgcctgctcccataagaaatcacggagc |
45172870 |
T |
|
| Q |
288 |
cacccattaatggtaatcgaactc |
311 |
Q |
| |
|
||| ||||||||| |||||||| |
|
|
| T |
45172871 |
cacttgttaatggtactcgaactc |
45172894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 311
Target Start/End: Original strand, 239339 - 239641
Alignment:
| Q |
9 |
gtggcaattccacccagaaggtaatgggttactcctacagcacgtccctgtacaatgctcaaggctctaggctgagtagcaggagcaacttttaatttat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
239339 |
gtggcaattccacccagaaggtaatgggttactcctacagcacgtccttgtataatgctcaaggctctaggctgagtagcaggagcaacttttaatttgt |
239438 |
T |
|
| Q |
109 |
tatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacattaaactaaaagcccatacaaaatgggcacctaagnn |
208 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||||||||| |||||||||| |||||||||||| || ||||| |||||||| ||||||||| |
|
|
| T |
239439 |
tatgagcccaaacgatagattcaatgagttcttgccaataaccacggccgctgaataaaaacattaaactgaaggcccagacaaaatgagcacctaagaa |
239538 |
T |
|
| Q |
209 |
nnnnngaccatatgcagataatgaggaaccataagactgaattacctgggatgcctgcgcccataagaaatcgcggagccacccattaatggtaatcgaa |
308 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || || |||||||| ||||| |||||||| || |||||||||||||| ||||| ||| |
|
|
| T |
239539 |
aaaaagaccatatgcagataatgaagaaccataagactgaatgacttgcgatgcctgtgcccacaagaaatctcgaagccacccattaatcgtaatggaa |
239638 |
T |
|
| Q |
309 |
ctc |
311 |
Q |
| |
|
||| |
|
|
| T |
239639 |
ctc |
239641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 45273434 - 45273528
Alignment:
| Q |
80 |
ctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacatta |
174 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
45273434 |
ctgagtaacaggagcaacttttaatttattatgagcccaaacgatggattcaataagtttatgccaataaccacggccgctgaatagaaacatta |
45273528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 45269877 - 45269966
Alignment:
| Q |
85 |
tagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataaccacgcccgctgaatagaaacatta |
174 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45269877 |
tagcaggagaaccttttaatttattatgagcccaaacgatggattctataagttcttgccaataaccacgcccgatgaatagaaacatta |
45269966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 28243425 - 28243343
Alignment:
| Q |
70 |
aggctctaggctgagtagcaggagcaacttttaatttattatgagcccaaacgatggattcgataagttcttgccaataacca |
152 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||| ||||||||||||| |||||| || |||||| | ||||| ||| | ||||||| |
|
|
| T |
28243425 |
aggctctaggttgagtagtaggagcagcttataatttattatgaccccaaatgacggattcaacaagtttttggcgataacca |
28243343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University