View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7002_low_1 (Length: 785)
Name: NF7002_low_1
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 657; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 18 - 770
Target Start/End: Original strand, 31078162 - 31078929
Alignment:
| Q |
18 |
atggtttatactcatgcgtcgttatgcgagagtatgagactttatcctccagttccagtggatactaaagaagcagcgtacgatgatgttttgccagatg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31078162 |
atggtttatactcatgcgtcgttatgcgagagtatgagactttatcctccagttccagtggatactaaagaagcagcgtacaatgatgttttgccagatg |
31078261 |
T |
|
| Q |
118 |
gaacttttgtgaagaaagggtggagagtggcgtatcatatatatgctatgggaaggtcagagaaaatatggggacttgattgggctgagtttcgaccgga |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078262 |
gaacttttgtgaagaaagggtggagagtggcgtatcatatatatgctatgggaaggtcggagaaaatatggggacttgattgggctgagtttcgaccgga |
31078361 |
T |
|
| Q |
218 |
gaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatgcggtttttcaagctgggccgagggtgtgtttagga |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31078362 |
gaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatgcggtttttcaagctgggccgagggtgtgtttagga |
31078461 |
T |
|
| Q |
318 |
aaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagtttagggtggttcctgcgatggataaaggggttgagccggagtaca |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31078462 |
aaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagtttagggtggttcctgcaatggataaaggggttgagccggagtaca |
31078561 |
T |
|
| Q |
418 |
ttgcacaccttacctcattgatgaagggtggcttcttggtaagaattgagaagcgaagccacaaagatcaataaaaattaataaggtcatgttaactagt |
517 |
Q |
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| T |
31078562 |
ttgcacaccttacctcattgatgaaaggtggcttctcggtaagaattgagaagcgaagccacaaagatcaataaaaattaataaggtcatgttaactagt |
31078661 |
T |
|
| Q |
518 |
atccctgagatattagttaagaaagttaaaagtgaaaaaatttcattgaaaaccacacattcttgattttaaaaaattacatatacaacttttccacatt |
617 |
Q |
| |
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|| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||||||||||| |
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| T |
31078662 |
attgctgatatattagttaagaaagttaaaagtgaaaaaatttcattaaaaaccacatattcttaattttaaaaagttaaatatacaacttttccacatt |
31078761 |
T |
|
| Q |
618 |
ttacattacaatg-------------tttcttagcatttctcataaaagtaaatgttgcataaatatgttccaaaagttccaacgtcaaaacatactcat |
704 |
Q |
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| T |
31078762 |
ttacattacaatgtttctatattagttttcttagcatttctcataaaagtaaatgttgcataaatatgttccaaaggttccaacgtcaaaacatactcat |
31078861 |
T |
|
| Q |
705 |
tatcttgtatagaatatgt--ttggtatcacaccaaatttgccaaaatcataatattcatcgtgatgt |
770 |
Q |
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| T |
31078862 |
tatcttgtatagaatatgtaattggtatcacaccaaatttgccaaaatcataatattcatcgtgatgt |
31078929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 31127480 - 31127934
Alignment:
| Q |
18 |
atggtttatactcatgcgtcgttatgcgagagtatgagactttatcctccagttccagtggatactaaagaagcagcgtacgatgatgttttgccagatg |
117 |
Q |
| |
|
|||||||| ||||||||| | ||||| |||||||||||||| |||||||| ||||| |||||| ||| ||||| || | || || |||||||| |||| |
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| T |
31127480 |
atggtttacactcatgcggctttatgtgagagtatgagactgtatcctccggttcccgtggatggtaaggaagcggcttgtgacgacgttttgccggatg |
31127579 |
T |
|
| Q |
118 |
gaacttttgtgaagaaagggtggagagtggcgtatcatatatatgctatgggaaggtcagagaaaatatggggacttgattgggctgagtttcgaccgga |
217 |
Q |
| |
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||||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || |
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| T |
31127580 |
gaactttagtgaagaaagggtggagggtgacatatcatatatatgctatgggaaggtccgagaaaatatggggacccgattgggctgagtttcgacctga |
31127679 |
T |
|
| Q |
218 |
gaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatgcggtttttcaagctgggccgagggtgtgtttagga |
317 |
Q |
| |
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||| ||||||||||||| ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
31127680 |
gagatggttgagtcaagttgatgatggaaagtggagctttattgggatggatccttatagttatgcggtttttcaggctgggccaagggtgtgtttagga |
31127779 |
T |
|
| Q |
318 |
aaggaaatggcgttcttgcagatgaagagggtggttgcagggatcatgaggcagtttagggtggttcctgcgatggataaaggggttgagccggagtaca |
417 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
31127780 |
aaggaaatggcgttcttgcagatgaaaagggtggttgccgggatcatgaggcagtttagggtggttcctgcaatggataaaggggttgagccggagttcg |
31127879 |
T |
|
| Q |
418 |
ttgcacaccttacctcattgatgaagggtggcttcttggtaagaattgagaagcg |
472 |
Q |
| |
|
|||||||||||| || | ||||| ||||||||| |||||| ||||||||||| |
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| T |
31127880 |
ctgcacaccttacttcgataatgaaaggtggcttcctggtaaagattgagaagcg |
31127934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 31132188 - 31132579
Alignment:
| Q |
18 |
atggtttatactcatgcgtcgttatgcgagagtatgagactttatcctccagttccagtggatactaaagaagcagcgtacgatgatgttttgccagatg |
117 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| | | ||||||||| |||||||| |||| |||||||| |||||||||||||||||||||| |
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| T |
31132188 |
atggtttacactcatgcatcgttatgcgagagtatgagaatggaccctccagtttcagtggatgctaaggaagcagcctacgatgatgttttgccagatg |
31132287 |
T |
|
| Q |
118 |
gaacttttgtgaagaaagggtggagagtggcgtatcatatatatgctatgggaaggtcagagaaaatatggggacttgattgggctgagtttcgaccgga |
217 |
Q |
| |
|
|||| || |||||||||||||||| ||| ||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||| || |
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| T |
31132288 |
gaacattagtgaagaaagggtggatagttgcgtatcatgtatatgttatgggaaggtctgagaaaatatggggatccgattgggctgagttttgacctga |
31132387 |
T |
|
| Q |
218 |
gaggtggttgagtcaagatgaggatgggaagtggagttttattgggatggatccttatagttatgcggtttttcaagctgggccgagggtgtgtttagga |
317 |
Q |
| |
|
|||||||||||||| || ||| ||||| || ||||| ||| |||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |
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| T |
31132388 |
gaggtggttgagtcgagctgacgatggaaaatggagctttgttgggatggatccttatacttatccgatttttcaagctgggccgagggtgtgtttaggg |
31132487 |
T |
|
| Q |
318 |
aaggaaatggcgttcttgcagatgaag---agggtggttgcagggatcatgaggcagtttagggtggttcctgcgatggataaaggggttga |
406 |
Q |
| |
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|| |||||||||||||| | |||||| ||| |||||| || || || ||| |||||||| || |||| ||||||||| |||||||||| |
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|
| T |
31132488 |
aaagaaatggcgttcttagaaatgaagatcaggttggttgttggcattataagggagtttaggttgcttccagcgatggatgaaggggttga |
31132579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 533 - 593
Target Start/End: Complemental strand, 24123380 - 24123320
Alignment:
| Q |
533 |
gttaagaaagttaaaagtgaaaaaatttcattgaaaaccacacattcttgattttaaaaaa |
593 |
Q |
| |
|
||||| |||||||||||| |||| ||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
24123380 |
gttaaaaaagttaaaagtagaaaattttaattgaaaacaacaaattcttgattttaaaaaa |
24123320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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