View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7002_low_11 (Length: 342)
Name: NF7002_low_11
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 41129459 - 41129139
Alignment:
| Q |
17 |
aattcctccaatatttccgcactttatagctagcgtaccatccattcattcagttgttgtgttcgtttctatcaagacaattccggttaatagagttgct |
116 |
Q |
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| T |
41129459 |
aattcctccaatatttccgcactttatagctagcgtaccatccattcattcagttgttgtgttcgtttctatcaagacaattccggttaatagagttgct |
41129360 |
T |
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| Q |
117 |
ttggaagagaggtttttgtttcggcaagtggaaccaagagagtatagaatatttcgatgtgttgcaagacgcggttacaatgatgtgcttgggaatcctg |
216 |
Q |
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| T |
41129359 |
ttggaagagaggtttttgtttcggcaagtggaaccaagagagtatagaatatttcgatgtgttgcaagacgcggttacaatgatgtgcttgggaatcctg |
41129260 |
T |
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| Q |
217 |
cggagtttgagtcacaattaatacaaaatctcaaggaatttattcaacaacaggattttatgcttgaggttaatgagggtgctgctacaactacaacaag |
316 |
Q |
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| T |
41129259 |
cggagtttgagtcacaattaatacaaaatctcaaggaatttattcaacaacaggattttatgcttgaggttaatgagggtgctgctacaactacaacaag |
41129160 |
T |
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| Q |
317 |
tgaacaattagtattatctac |
337 |
Q |
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| T |
41129159 |
tgaacaattagtagtatctac |
41129139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 7801714 - 7801957
Alignment:
| Q |
17 |
aattcctccaatatttccgcactttatagctagcgtaccatccattcattcagttgttgtgttcgtttctatcaagacaattccggttaatagagttgct |
116 |
Q |
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| T |
7801714 |
aattcctccaatattccttcacttcattgccaacataccaactattcattcagttgttgtatttgtttccattaaggcaattccaattactagtgttgca |
7801813 |
T |
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| Q |
117 |
ttggaagagaggtttttgtttcggcaagtggaaccaagagagtatagaatatttcgatgtgttgcaagacgcggttacaatgatgtgcttgggaatcctg |
216 |
Q |
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| T |
7801814 |
ttggaagagaagtttctatttcaacatgtggagccaagagaatggaaaatatttcgttgcattgtaaggcatggttacaacgatgtaattggagattcta |
7801913 |
T |
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| Q |
217 |
cggagtttgagtcacaattaatacaaaatctcaaggaatttatt |
260 |
Q |
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| T |
7801914 |
tggagtttgagtctcaattggtgcaacatctaaaggaatttatt |
7801957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 36526960 - 36526992
Alignment:
| Q |
148 |
aaccaagagagtatagaatatttcgatgtgttg |
180 |
Q |
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| T |
36526960 |
aaccaaaagagtatagaatatttcgatgtgttg |
36526992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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