View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7002_low_12 (Length: 306)

Name: NF7002_low_12
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7002_low_12
NF7002_low_12
[»] chr1 (8 HSPs)
chr1 (13-306)||(48585743-48586036)
chr1 (127-306)||(48640316-48640495)
chr1 (156-275)||(48661981-48662100)
chr1 (163-303)||(48617776-48617916)
chr1 (159-278)||(48629282-48629401)
chr1 (156-278)||(48667567-48667689)
chr1 (163-303)||(11547650-11547790)
chr1 (138-292)||(48656998-48657152)
[»] chr8 (3 HSPs)
chr8 (125-292)||(25892445-25892613)
chr8 (154-306)||(27224386-27224538)
chr8 (154-303)||(27228592-27228741)
[»] chr3 (1 HSPs)
chr3 (156-303)||(19665125-19665272)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 48586036 - 48585743
Alignment:
Q  13 ctgtgacacaagggaagaggaagtctttcttccaatataagagagcaagtattctcttgctataggtatctccaactttgaagaagaaaatcactcaata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48586036 ctgtgacacaagggaagaggaagtctttcttccaatataagagagcaagtattctcttgctataggtatctccaactttgaagaagaaaatcactcaata 48585937  T
Q  113 aataataaaaagaaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585936 aataataaaaagaaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaag 48585837  T
Q  213 tatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585836 tatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattag 48585743  T

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Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 127 - 306
Target Start/End: Complemental strand, 48640495 - 48640316
Alignment:
Q  127 aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640495 aaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaa 48640396  T
Q  227 gggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640395 gggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattag 48640316  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 156 - 275
Target Start/End: Complemental strand, 48662100 - 48661981
Alignment:
Q  156 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 255  Q
    |||||||| |||||||||||||||||||||||||||| |||| || |||||||||||| |||||||||||| |||||| |||| || |||||||||||||    
T  48662100 ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctgtcattttcaccacaacag 48662001  T
Q  256 agacggctggcaaaaacatg 275  Q
    |||  ||||||||| |||||    
T  48662000 agaaagctggcaaagacatg 48661981  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 303
Target Start/End: Original strand, 48617776 - 48617916
Alignment:
Q  163 tctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggc 262  Q
    |||||| ||||||||||||||||||||||| |||| || |||||| ||||| ||||||||||||||||||  |||| ||||||| |||||||||||  ||    
T  48617776 tctcttatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacagagaaagc 48617875  T
Q  263 tggcaaaaacatgcgagctgctaacaacatcattgacaaat 303  Q
    ||||||| ||||  || ||| |||||| |||||||| ||||    
T  48617876 tggcaaagacataagaactgttaacaatatcattgaaaaat 48617916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 159 - 278
Target Start/End: Complemental strand, 48629401 - 48629282
Alignment:
Q  159 cttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagaga 258  Q
    ||||| |||||||||||||||||||||||||||| |||| || |||||||||| | ||||||||||||||||||| |||| ||||| || ||||||||||    
T  48629401 cttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagaga 48629302  T
Q  259 cggctggcaaaaacatgcga 278  Q
      || |||||| ||||||||    
T  48629301 aagcaggcaaagacatgcga 48629282  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 156 - 278
Target Start/End: Complemental strand, 48667689 - 48667567
Alignment:
Q  156 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 255  Q
    |||||||| |||||||||||||||||||||||||||| |||| || ||||||| || | ||||||||||||||||||  |||| ||||||| ||||||||    
T  48667689 ctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgcaaagggtgcttctgtcatcttcatcacaacag 48667590  T
Q  256 agacggctggcaaaaacatgcga 278  Q
    | |  | ||||||||| ||||||    
T  48667589 aaaaaggtggcaaaaatatgcga 48667567  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 303
Target Start/End: Complemental strand, 11547790 - 11547650
Alignment:
Q  163 tctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagagacggc 262  Q
    |||||||||||| ||||||||||||||||| |||| || || ||| ||||| ||||||||||||||||||  |||| ||||||| ||||||| |||  ||    
T  11547790 tctcttttccaggacaaggacacataaaccctcttcttagattagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaagaaagc 11547691  T
Q  263 tggcaaaaacatgcgagctgctaacaacatcattgacaaat 303  Q
    ||||||| |||| | | | | |||||||||| |||| ||||    
T  11547690 tggcaaagacatacaaacggttaacaacatcgttgaaaaat 11547650  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 292
Target Start/End: Complemental strand, 48657152 - 48656998
Alignment:
Q  138 gaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactg 237  Q
    |||| ||||||| || |||||||||| |||| |||  || | ||||| ||||||  |||| ||  |||||| |||| |||||||||||||||| |  |||    
T  48657152 gaagctcccattcagattctccttgtatcttatccttcatacggacatataaactctcttcttaaactagggaagtgtcttgctgcaaagggttcttctg 48657053  T
Q  238 ttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat 292  Q
    | ||||||||||||||  |||  ||||||||| |||||  | |||||||||||||    
T  48657052 tcatcttcaccacaacgcagaaagctggcaaagacatggaaactgctaacaacat 48656998  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 125 - 292
Target Start/End: Original strand, 25892445 - 25892613
Alignment:
Q  125 aaaaatgacatacgaagatcccattaagcttctccttgtctcttttccagcacaaggacacataaaccatcttgttggact-aggaaagtatcttgctgc 223  Q
    ||||||| || || |||||||||||||||| ||||||||||||||||||   ||| ||||| ||||||||||| |||| || |||||| | |||||||||    
T  25892445 aaaaatggcaaacaaagatcccattaagctcctccttgtctcttttccatttcaacgacacctaaaccatcttcttggtctaaggaaaatctcttgctgc 25892544  T
Q  224 aaagggtgccactgttatcttcaccacaacagagacggctggcaaaaacatgcgagctgctaacaacat 292  Q
    || ||||||  || | ||||||||||||||||| || || |||| ||||||||||  ||||||||||||    
T  25892545 aaggggtgcatctatcatcttcaccacaacagaaacagccggcacaaacatgcgaattgctaacaacat 25892613  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 306
Target Start/End: Complemental strand, 27224538 - 27224386
Alignment:
Q  154 ttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 253  Q
    |||||||||| || | ||||||||||||||||||||| | | |  || |||||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  27224538 ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagactaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 27224439  T
Q  254 agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattag 306  Q
    |||||  ||||||||| |  || || ||| |||||| |||| ||| |||||||    
T  27224438 agagaaagctggcaaagaattgagaactgttaacaatatcactgaaaaattag 27224386  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 303
Target Start/End: Complemental strand, 27228741 - 27228592
Alignment:
Q  154 ttctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaac 253  Q
    |||||||||| || | ||||||||||||||||||||| | | |  || || ||||||||| ||||||  |||||||| |  |||||||||||| ||||||    
T  27228741 ttctccttgtatcatatccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaac 27228642  T
Q  254 agagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaat 303  Q
     ||||  ||||||| | |  || || ||| ||||||||||||||| ||||    
T  27228641 tgagaaagctggcagagagttgagaactgttaacaacatcattgataaat 27228592  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 303
Target Start/End: Original strand, 19665125 - 19665272
Alignment:
Q  156 ctccttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacag 255  Q
    |||||| |||| | ||||||||||||||||||||||| |||| || |||||| ||||| |||||||||||||||| |  | || ||||||| ||| ||||    
T  19665125 ctccttatctcatatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggttcttcagtcatcttcatcactacag 19665224  T
Q  256 agacggctggcaaaaacatgcgagctgctaacaacatcattgacaaat 303  Q
    |||  ||||||||| |||||| | ||| ||||||||||| | ||||||    
T  19665225 agaaagctggcaaagacatgcaaactgttaacaacatcactcacaaat 19665272  T

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