View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7002_low_13 (Length: 296)
Name: NF7002_low_13
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 48585354 - 48585091
Alignment:
| Q |
17 |
tgtgcatcctttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaa |
116 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48585354 |
tgtgcatcctttttgttcatttccattcctaggtaaacttgtcttagaagagtttaaggacttatctaaagtgttttgtgtattagtggatacctatgaa |
48585255 |
T |
|
| Q |
117 |
gaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaaaaggagcaagca |
216 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48585254 |
gaactagagcatgaattcatagattatatttcgaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaaaaggagcaagca |
48585155 |
T |
|
| Q |
217 |
acattcatggtgatttcgccaagagcaatgatgatgataaaatcatagagtggctagacacaaa |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48585154 |
acattcatggtgatttcgccaagagcaatgatgatgataaaatcatagagtggctagacacaaa |
48585091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 48639923 - 48639740
Alignment:
| Q |
21 |
catcctttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaac |
120 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48639923 |
catccttttttcccatttccatttctaggtaaactcatcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaac |
48639824 |
T |
|
| Q |
121 |
tagagcatgaattcatagattatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaa |
204 |
Q |
| |
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|||||||||| |||||||||||| |||| |||||||||||| |||||||| || |||||||||| ||||| ||||||||||||| |
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| T |
48639823 |
tagagcatgatttcatagattatatttcaaaaaaatcaatcaccataagacctattggtccttcgtttaagaatccaaatgcaa |
48639740 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 72 - 280
Target Start/End: Complemental strand, 48667119 - 48666908
Alignment:
| Q |
72 |
aaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaa |
171 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||| ||||||||||| |||||||| |
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| T |
48667119 |
aaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaaaaatcaatcgccataagac |
48667020 |
T |
|
| Q |
172 |
ctgttggtccttcatttaaaaatccaaatgcaaaaggagcaagcaac---attcatggtgatttcgccaagagcaatgatgatgataaaatcatagagtg |
268 |
Q |
| |
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| |||||||||| |||||||||||||| ||||| |||||||||||| || | |||||||||| | ||||||||||||||| ||| || |||||||| |
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| T |
48667019 |
ccgttggtcctttgtttaaaaatccaaaggcaaacggagcaagcaacaatatacttggtgatttcactaagagcaatgatgattgtaatattatagagtg |
48666920 |
T |
|
| Q |
269 |
gctagacacaaa |
280 |
Q |
| |
|
|||| ||||||| |
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|
| T |
48666919 |
gctaaacacaaa |
48666908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 72 - 280
Target Start/End: Complemental strand, 48661524 - 48661313
Alignment:
| Q |
72 |
aaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaa |
171 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||| |||| |||||||||||| |||||||| |
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|
| T |
48661524 |
aaggacatgtctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaaatcaatcaccataagac |
48661425 |
T |
|
| Q |
172 |
ctgttggtccttcatttaaaaatccaaatgcaaaaggagcaagcaac---attcatggtgatttcgccaagagcaatgatgatgataaaatcatagagtg |
268 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| |||||||||||| | || |||||||||| | ||||| ||||||||| || || |||||||| |
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| T |
48661424 |
atgttggtcctttgtttaagaatccaaaggcaaatggagcaagcaacaatactcttggtgatttcactaagagtaatgatgattctactattatagagtg |
48661325 |
T |
|
| Q |
269 |
gctagacacaaa |
280 |
Q |
| |
|
|||| ||||||| |
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|
| T |
48661324 |
gctaaacacaaa |
48661313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 11547257 - 11547001
Alignment:
| Q |
21 |
catcctttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaac |
120 |
Q |
| |
|
||||||||| |||||| |||||| ||||| | |||| |||||||| |||||||| | || ||||||||||||||||| ||||| || ||||||||||||| |
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|
| T |
11547257 |
catccttttagtccatatccatttctagggacactcatcttagaacagtttaagaatttatctaaagtgttttgtgttttagtagaaacctatgaagaac |
11547158 |
T |
|
| Q |
121 |
tagagcatgaattcatagattatctttccaaaaaatcaatccccataagaactgttggtccttcatttaaaaatccaaatgcaaaaggagcaagcaacat |
220 |
Q |
| |
|
|||| ||||| ||||| || ||| || | |||||||| |||| ||||||| || ||||||| | ||||||||||||||| ||||| ||||| || || |
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| T |
11547157 |
tagaacatgatttcattgactatattacaaaaaaatccatccacataagacctattggtccattgtttaaaaatccaaatattaaaggtgcaagtaatat |
11547058 |
T |
|
| Q |
221 |
tcatggtgatttcgccaagagcaatgatgatgataaaatcatagagtggctagacacaaa |
280 |
Q |
| |
|
|| ||| ||||| | ||||| ||||||| ||| || |||||||||||| ||||||| |
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|
| T |
11547057 |
tcgtggagattttgttaagag---tgatgattgtaatattatagagtggctaaacacaaa |
11547001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 48618309 - 48618448
Alignment:
| Q |
21 |
catcctttttgtccatttccattcctaggtaaactcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaac |
120 |
Q |
| |
|
||||||||| ||| ||||||||| ||||| | |||| |||||||| |||||||| | ||||||||||| |||||||| ||||| || ||||||||||||| |
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|
| T |
48618309 |
catccttttagtcaatttccatttctagggacactcatcttagaacagtttaagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaac |
48618408 |
T |
|
| Q |
121 |
tagagcatgaattcatagattatctttccaaaaaatcaat |
160 |
Q |
| |
|
|||||||||| ||||| || ||| |||| |||||| |||| |
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|
| T |
48618409 |
tagagcatgatttcattgactatatttcaaaaaaaacaat |
48618448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 280
Target Start/End: Complemental strand, 48628837 - 48628633
Alignment:
| Q |
76 |
acttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataagaactgt |
175 |
Q |
| |
|
||||||| ||| | ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||| | | |
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|
| T |
48628837 |
acttgtccaaaatattttgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaaatcagtcctcattagacccat |
48628738 |
T |
|
| Q |
176 |
tggtccttcatttaaaaatccaaatgcaaaaggagcaagcaacattcatggtgatttcgccaagagcaatgatgatgataaaatcatagagtggctagac |
275 |
Q |
| |
|
||||||| || || || |||| ||||| ||||||||| |||| |||||||| | |||||| |||||||| || || |||||||||||| || |
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|
| T |
48628737 |
tggtcctctgttcaagaacccaacaataaaagcagcaagcaatattcgaggtgattttgttaagagcgatgatgattgtagtattatagagtggctacac |
48628638 |
T |
|
| Q |
276 |
acaaa |
280 |
Q |
| |
|
||||| |
|
|
| T |
48628637 |
acaaa |
48628633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 48653114 - 48652997
Alignment:
| Q |
53 |
actcgtcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaa |
152 |
Q |
| |
|
||||||||||||| | ||||| | || |||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| || ||| |||| || |
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|
| T |
48653114 |
actcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaac |
48653015 |
T |
|
| Q |
153 |
aaatcaatccccataaga |
170 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
48653014 |
aaatcaatcctcataaga |
48652997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 48656537 - 48656445
Alignment:
| Q |
78 |
ttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataaga |
170 |
Q |
| |
|
|||||||||| || |||||||| ||||||||||||||||||||||||| ||| || || |||||| |||| |||| |||||| ||||||| |
|
|
| T |
48656537 |
ttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaaagtcaatcatcataaga |
48656445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 60 - 162
Target Start/End: Original strand, 19665704 - 19665806
Alignment:
| Q |
60 |
ttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaa |
159 |
Q |
| |
|
|||||| |||||||| | || |||||||||||||||||||| ||||||| ||||| |||||||||||||| | ||| || ||| |||| |||||||||| |
|
|
| T |
19665704 |
ttagaacagtttaagaatttatctaaagtgttttgtgtattggtggatagttatgatgaactagagcatgattacatcgactatatttcgaaaaaatcaa |
19665803 |
T |
|
| Q |
160 |
tcc |
162 |
Q |
| |
|
||| |
|
|
| T |
19665804 |
tcc |
19665806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 27223953 - 27223830
Alignment:
| Q |
70 |
ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttccaaaaaatcaatccccataag |
169 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||| ||||| |||||||| ||||| ||||| || ||| |||| ||||| ||| || ||||| |
|
|
| T |
27223953 |
ttaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttctaaaaattcagtcaaaataag |
27223854 |
T |
|
| Q |
170 |
aactgttggtccttcatttaaaaa |
193 |
Q |
| |
|
| || ||||||||| |||||||| |
|
|
| T |
27223853 |
acctattggtcctttgtttaaaaa |
27223830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 27228144 - 27228066
Alignment:
| Q |
70 |
ttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatctttc |
148 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||| ||| | || ||||| |||||| ||||| |||| |
|
|
| T |
27228144 |
ttaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttc |
27228066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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