View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7002_low_14 (Length: 273)
Name: NF7002_low_14
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 255
Target Start/End: Complemental strand, 8974964 - 8974719
Alignment:
| Q |
10 |
agaagaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtg |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974964 |
agaagaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtg |
8974865 |
T |
|
| Q |
110 |
atgnnnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttga |
209 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8974864 |
atgtttttttgtgtgaagttgagtgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttga |
8974765 |
T |
|
| Q |
210 |
tatgaccagctccttgtgcaaaaggtgttgctacgttgttcccttt |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
8974764 |
tatgaccagctccttgtgcaaaaggtgttgctacgttgttaccttt |
8974719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 8945516 - 8945710
Alignment:
| Q |
10 |
agaagaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtg |
109 |
Q |
| |
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|||||||||| |||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
8945516 |
agaagaatttccagcattgaaaaaagctataaaagaagggtaattaagatccaaggaaggtttagaacaatcattgaaagaggatcttgtaatcgtagtg |
8945615 |
T |
|
| Q |
110 |
atgnnnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggg |
204 |
Q |
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| T |
8945616 |
atgtttttttgtgtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattggg |
8945710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 8963569 - 8963337
Alignment:
| Q |
9 |
gagaagaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagt |
108 |
Q |
| |
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||||||||||| |||| ||||| |||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| | || |||||||| ||| ||| |
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| T |
8963569 |
gagaagaatttccagcgttgaaaaaagcaataaaagaagggtagttgagatgcaaggaaggattagaacaatcattggatgatgatcttgttatggcagt |
8963470 |
T |
|
| Q |
109 |
gatgnnnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttg |
208 |
Q |
| |
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||| |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||| | || |||||| |
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| T |
8963469 |
aatgtgtttttgtgtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttg |
8963370 |
T |
|
| Q |
209 |
atatgaccagctccttgtgcaaaaggtgttgct |
241 |
Q |
| |
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|||||||||||||| |||||||||||||||| |
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|
| T |
8963369 |
atatgaccagctcccaatgcaaaaggtgttgct |
8963337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 8958536 - 8958323
Alignment:
| Q |
28 |
gaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgnnnnnnngtgtgaag |
127 |
Q |
| |
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|||||| ||||||||||||||||| || |||||||| ||||||| ||| |||||||| | |||||||||||| ||| ||||||| ||| | || |
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| T |
8958536 |
gaagaatgcaataaaagaagggtagttaagatccaaagaaggttcagagcaatcattcgaagaagatcttgtgatggcagtgatgtttttttgtgagtag |
8958437 |
T |
|
| Q |
128 |
ttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctccttgtg |
227 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| || || || | |||||||||||| || |
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| T |
8958436 |
ctaagtgcacaaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatg |
8958337 |
T |
|
| Q |
228 |
caaaaggtgttgct |
241 |
Q |
| |
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||||||| |||||| |
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|
| T |
8958336 |
caaaaggagttgct |
8958323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 9947987 - 9948175
Alignment:
| Q |
10 |
agaagaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtg |
109 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| |||||| || | |||||| ||||||||||| |||||||| | |||||||||||| ||||| |
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| T |
9947987 |
agaagaatttccaccattgaagaaagcaataaaaaaagggtggttaatatccaatgaaggtttagagcaatcattgaatgtggatcttgtaatggtagtg |
9948086 |
T |
|
| Q |
110 |
atgnnnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctct |
198 |
Q |
| |
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|| |||||||||| ||| || | ||||||||||||||||||||| ||||||| ||||||| ||| || |||| ||| ||||| |
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| T |
9948087 |
atatgtttctgtgtgaagttaagtccatagagaagattaacataatcttgtgcaccaacgtcataaagaagaccggggtcaagcgctct |
9948175 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 9949362 - 9949422
Alignment:
| Q |
120 |
gtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaag |
180 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||| |
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|
| T |
9949362 |
gtgtgaagttaagtgcacaaagaagattaagataatgtcttacaccaacatcataaacaag |
9949422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 34962299 - 34962530
Alignment:
| Q |
10 |
agaagaatttgcagcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtg |
109 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||| | ||| |||||||| ||| ||||| |
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|
| T |
34962299 |
agaagaatttccatcattgaaaaaagcaataaaagaagggtagttaagatccaaggaaggtttagaacaatcattggaagaggatcttgtgatggtagtg |
34962398 |
T |
|
| Q |
110 |
atgnnnnnnngtgtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttga |
209 |
Q |
| |
|
||| ||| | | || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| || || || | |
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|
| T |
34962399 |
atgtttttttgtgagtatttaagtgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaa |
34962498 |
T |
|
| Q |
210 |
tatgaccagctccttgtgcaaaaggtgttgct |
241 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
34962499 |
catgaccagctcccaatgcaaaaggtgttgct |
34962530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 21686691 - 21686910
Alignment:
| Q |
22 |
agcattgaagaaagcaataaaagaagggtaattgagatccaacgaaggtttagaacaatcattagtagaagatcttgtaatgatagtgatgnnnnnnngt |
121 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||| || ||||||||||| |||||||| |||||||||||||||| | ||||| || |
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|
| T |
21686691 |
agcattggagaaagcaataaaagaagggtagttaagatctaaggaaggtttagagcaatcattgaaagaagatcttgtaatggcactgatgtttttttgt |
21686790 |
T |
|
| Q |
122 |
gtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctc |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||| | ||||||||| || ||||| ||||||||||||| |
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|
| T |
21686791 |
gtgaagttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctc |
21686890 |
T |
|
| Q |
222 |
cttgtgcaaaaggtgttgct |
241 |
Q |
| |
|
| ||||||||| |||||| |
|
|
| T |
21686891 |
ccaatgcaaaaggagttgct |
21686910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 49008601 - 49008501
Alignment:
| Q |
122 |
gtgaagttgagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagtccagggttaagtgctctgttggggttgatatgaccagctc |
221 |
Q |
| |
|
|||||||| | |||||| |||||||| |||||||||||| || ||||||||||||||||||| | ||||||||| ||||| |||||||| || |||| |
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|
| T |
49008601 |
gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc |
49008502 |
T |
|
| Q |
222 |
c |
222 |
Q |
| |
|
| |
|
|
| T |
49008501 |
c |
49008501 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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