View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7002_low_6 (Length: 528)
Name: NF7002_low_6
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 42938236 - 42937711
Alignment:
| Q |
1 |
attagaccaattcaaaaacagaacaaccccataacaatcatttcaaacaaatcacacactacccattagcatctaccacaaaaataaccaatacccattt |
100 |
Q |
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| T |
42938236 |
attagaccaattcaaaaacagaacaaccccataacaatcatttcaaacaaatcacacactacccattagcatctaccacaaaaataaccaatacccattt |
42938137 |
T |
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| Q |
101 |
caccaaacccactttcacaacaaattaaccatgtataagcacaccccataatnnnnnnnnttcaattttttcccttgttattgtacctggataccaaggc |
200 |
Q |
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| T |
42938136 |
caccaaacccactttcacaacaaattaaccatgtataagcacaccccataataaaaaaa-ttcaattttt-cccttgttattgtacctggataccaaggc |
42938039 |
T |
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| Q |
201 |
tcgggccaggaaggagtggaaaacgaagtagcttgagggtcttcaagatttcgaagccagacaaggtcatcaactttcttagcaatttgaggaatgcgga |
300 |
Q |
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| T |
42938038 |
tcaggccaggaaggagtggaaaacgaagtagcttgagggtcttcaagatttcgaagccagacaaggtcatcaactttcttagcaatttgaggaatgcgga |
42937939 |
T |
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| Q |
301 |
aagcatcatttgcccacgcaacaccattgttaaatcctcttttaagaaactccatatccttgcgaaccacttgaccaaagtgaccaaaattgccaagtgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42937938 |
aagcatcatttgcccacgcaacaccattgttaaatcctcttttaagaaactccatatccttgcgaaccacttgaccaaagtgaccaaaattgccaagtgc |
42937839 |
T |
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| Q |
401 |
tcgttgcttcgaatgattcttcttcttcttactcgacggcgtcgttgtggcccgtacaaagggtagtgaaggaggtgctgtcaccgtcgccatgggcgga |
500 |
Q |
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| T |
42937838 |
tcgttgcttcgaatgattcttcttcttcttactcgacggtgtcgttgtggcccgtacaaagggtagtgaaggaggtgctgtcaccgtcgccatgggcgga |
42937739 |
T |
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| Q |
501 |
gagtgaagaagattggaggatgaatcaa |
528 |
Q |
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| T |
42937738 |
gagtgaagaagattggaggatgaatcaa |
42937711 |
T |
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