View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7002_low_7 (Length: 430)

Name: NF7002_low_7
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7002_low_7
NF7002_low_7
[»] chr4 (1 HSPs)
chr4 (18-270)||(44523853-44524105)
[»] chr2 (3 HSPs)
chr2 (108-267)||(41322105-41322264)
chr2 (18-111)||(41319022-41319115)
chr2 (179-269)||(37726150-37726240)
[»] chr7 (2 HSPs)
chr7 (272-417)||(3800200-3800345)
chr7 (288-412)||(3789764-3789888)
[»] chr5 (1 HSPs)
chr5 (39-268)||(12503202-12503425)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 44524105 - 44523853
Alignment:
Q  18 ttaatacatggagtcaaaccataagtatatttccttatatgatgtttattaccgttggcttatcaaaagcaaataatagctatgaagacacttaatgtat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  44524105 ttaatacatggagtcaaaccataagtatatttccttatatgatgtttattactgttggcttatcaaaagcaaataatagccatgaagacacttaatgtat 44524006  T
Q  118 atctctttataccatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagtgaaattagtggacataatatacaaacctga 217  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  44524005 atctctttatatcatgtttattaccgttggttattcgacatatatatgtaagtgtaacatgtactttagagacatcagtggacataatatacaaacctga 44523906  T
Q  218 ttacattccagccactgtccattgttcatatcttatttttattttcattagag 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44523905 ttacattccagccactgtccattgttcatatcttatttttattttcattagag 44523853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 41322105 - 41322264
Alignment:
Q  108 cttaatgtatatctctttataccatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagtgaaattagtggacataatat 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||||||    
T  41322105 cttaatgtatatctctttatatcatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagagatatcagtgaacataatat 41322204  T
Q  208 acaaacctgattacattccagccactgtccattgttcatatcttatttttattttcatta 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41322205 acaaacctgattacattccagccactgtccattgttcatatcttatttttattttcatta 41322264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 41319022 - 41319115
Alignment:
Q  18 ttaatacatggagtcaaaccataagtatatttccttatatgatgtttattaccgttggcttatcaaaagcaaataatagctatgaagacactta 111  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  41319022 ttaatacatggagtcaaaccataagtatatttacttatatgatgtttattaccgttgacttatcaaaagcaaataatagccatgaagacactta 41319115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 37726150 - 37726240
Alignment:
Q  179 tactttagtgaaattagtggacataatatacaaacctgattacattccagccactgtccattgttcatatcttatttttattttcattaga 269  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  37726150 tactttagagatatcagtggacataatatacaaaccagattacattctagccactgtccattgttcatatcatatttttattttcattaga 37726240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 272 - 417
Target Start/End: Original strand, 3800200 - 3800345
Alignment:
Q  272 tcaacatcaaatattccatgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgatggacacaa 371  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800200 tcaacatcaaatatttcatgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgatggacacaa 3800299  T
Q  372 caaacatcccatggcgtggtgtagataagatcttatttgataatat 417  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  3800300 caaacatcccatggcgtggcgtagataagatcttatttgataatat 3800345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 412
Target Start/End: Complemental strand, 3789888 - 3789764
Alignment:
Q  288 catgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgatggacacaacaaacatcccatggcg 387  Q
    ||||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  3789888 catgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatgaacacaacaaacttcccatggcg 3789789  T
Q  388 tggtgtagataagatcttatttgat 412  Q
     || |||||||||||||| ||||||    
T  3789788 cggcgtagataagatcttctttgat 3789764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 39 - 268
Target Start/End: Complemental strand, 12503425 - 12503202
Alignment:
Q  39 taagtatatttccttatatgatgtttattaccgttggcttatcaaaagcaaataatagctatgaagacacttaatgtatatctctttataccatgtttat 138  Q
    |||||||||||||||||||   |||||||||||||||||||||||||| |||||||||| || ||| |||||||||||||| || ||||| |||||  ||    
T  12503425 taagtatatttccttatatatggtttattaccgttggcttatcaaaaggaaataatagccataaagccacttaatgtatatttccttatatcatgtgcat 12503326  T
Q  139 taccgttggttattcaacatatatatgtaagtgtaacatgtactttagtgaaattagtggacataatatacaaacctgattacattccagccactgtcca 238  Q
    ||||||||| ||||   |||||||||      |||||||||||| ||| || |||||||||||||||||||||||| |||||||||| ||| || |||||    
T  12503325 taccgttggctattagtcatatatat------gtaacatgtactgtagagagattagtggacataatatacaaaccagattacattctagctacagtcca 12503232  T
Q  239 ttgttcatatcttatttttattttcattag 268  Q
    |||| |||||| |||||||| |||||||||    
T  12503231 ttgtccatatcatatttttactttcattag 12503202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University