View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7002_low_8 (Length: 415)
Name: NF7002_low_8
Description: NF7002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7002_low_8 |
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| [»] scaffold0262 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 36663671 - 36663285
Alignment:
| Q |
18 |
aaagcatgctttggtcgacctgtgaggatagttgaaaaggatatgtattggtttcaattaaccgtggaggaagcattctatctaagttattccttgaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36663671 |
aaagcatgctttggtcgacctgtgaggatagttgaaaaggatatgtattggtttcaattaaccgtggaggaagcattctatctatgttattccttgaaat |
36663572 |
T |
|
| Q |
118 |
gcctcaagattaagattaatgttggtgctgatactggtcccttaaatgatgaagagttgtggcattacttcaggtctaagaaagaaacattcccttattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36663571 |
gcctcaagattaagattaatgttggtgctgataccggtcccttaaatgatgaagagttgtggcattacttcaggtccaagaaagaaacattcccttattt |
36663472 |
T |
|
| Q |
218 |
atacaaggcttattctcatcttagaatgaaaaaatgggttgtgaggtcaggggctcagtatggtgtagactttattgtctatcgccatcatcctgctcgg |
317 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36663471 |
ctacaaggcttattctcatcttagaatgaaaaattgggttgtgaggtcaggggctcagtatggtgtagacttgattgtctatcgccatcatcctgctcgg |
36663372 |
T |
|
| Q |
318 |
gtgcattctgagtatggtgcacttgttctatctcatgacaaggatggtgatctaaatggaagattgagagtatggtctgatgttcat |
404 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36663371 |
gtgcattctgagtatggtgtacttgttctatctcatgacaaggatggtgatctaaatggaagattgagagtatggtctgatgttcat |
36663285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 6964 - 6586
Alignment:
| Q |
18 |
aaagcatgctttggtcgacctgtgaggatagttgaaaaggatatgtattggtttcaattaaccgtggaggaagcattctatctaagttattccttgaaat |
117 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
6964 |
aaagcgtgctttggtcgacctgtgaggatagttgacaaggatatgtattggtttcaattaaccgtggaggaagcattctatctaagttattcattgaaat |
6865 |
T |
|
| Q |
118 |
gcctcaagattaagattaatgttggtgctgatactggtcccttaaatgatgaagagttgtggcattacttcaggtctaagaaagaaacattcccttattt |
217 |
Q |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||| |
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| T |
6864 |
gcctcaagattaa------tgacggtgctgatactggtcccttaaatgatgaagagttgtggtgttgcttcaagtccaagaaagaaacattcccttattt |
6771 |
T |
|
| Q |
218 |
atacaaggcttattctcatcttagaatgaaaaaatgggttgtgaggtcaggggctcagtatggtgtagactttattgtctatcgccatcatcctgctcgg |
317 |
Q |
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||||||||||||||||| ||| |||||||||| ||||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||| || |
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| T |
6770 |
ctacaaggcttattctcaccttcgaatgaaaaactgggtagtgaggtcaaggtctcagtatggtgtagactttattgtttatcgccatcatccggcttgg |
6671 |
T |
|
| Q |
318 |
gtgcattctgagtatggtgcacttgttctatctcatgacaaggatggtgatctaaatggaagattgagagtatggtctgatgttc |
402 |
Q |
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||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||||||||||||||||||| |||||||||| |
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| T |
6670 |
gtgcattctgagtatggtgtacttgttctatcacatgacaatgatggtgaattaaatggaagattgagagtatgatctgatgttc |
6586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 129 - 404
Target Start/End: Original strand, 13457965 - 13458238
Alignment:
| Q |
129 |
aagattaatgttggtgctgatactggtcccttaaatgatgaagagttgtggcattacttcaggtctaagaaagaaacattcccttatttatacaaggctt |
228 |
Q |
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|||||||||| || ||||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||| ||| |||||||| | |
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| T |
13457965 |
aagattaatggtgatgctgataccggtcccttaaatgatgaagagttatggtgttacttcaagtctaagaaagatgcattcccttgtttctacaaggcct |
13458064 |
T |
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| Q |
229 |
attctcatcttagaatgaaaaaatgggttgtgaggtcaggggctca---gtatggtgtagactttattgtctatcgccatcatcctgctcgggtgcattc |
325 |
Q |
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||||||| ||| | |||||||| ||| |||||||| ||||| ||||||||||||||| |||||| ||||| ||||||| |||||||||||||| |
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| T |
13458065 |
attctcaccttcggatgaaaaactggt-----aggtcaggagctcatcagtatggtgtagacttgattgtccatcgcaatcatccggctcgggtgcattc |
13458159 |
T |
|
| Q |
326 |
tgagtatggtgcacttgttctatctcatgacaaggatggtgatctaaatggaagattgagagtatggtctgatgttcat |
404 |
Q |
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||||||| ||| |||||||||| ||||| | |||| | | ||||||| |||||||||||||||||||||||||||| |
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| T |
13458160 |
tgagtattgtgtgtttgttctatcacatgagatcgatgattacctaaatgaaagattgagagtatggtctgatgttcat |
13458238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 49350313 - 49350199
Alignment:
| Q |
82 |
tggaggaagcattctatctaagttattccttgaaatgcctcaagattaagattaatgttggtgctgatactggtcccttaaatgatgaagagttgtggca |
181 |
Q |
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||||||||| |||||| ||| | |||||||||||||||||||||||||| || || || ||||||||||||||||||||| ||||||||||||| |
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| T |
49350313 |
tggaggaagtattctacctatgctattccttgaaatgcctcaagattaa------tggtgatgttgatactggtcccttaaatgaagaagagttgtggcg |
49350220 |
T |
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| Q |
182 |
ttacttcaggtctaagaaaga |
202 |
Q |
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| |||||| ||| |||||||| |
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| T |
49350219 |
taacttcaagtccaagaaaga |
49350199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 250597 - 250506
Alignment:
| Q |
105 |
tattccttgaaatgcctcaagattaagattaatgttggtgctgatactggtcccttaaatgatgaagagttgtggcattacttcaggtctaagaaaga |
202 |
Q |
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|||||||||||||||||||||||||| || || || ||||||||||||||||||||| ||||||||||||| | |||||| ||| |||||||| |
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| T |
250597 |
tattccttgaaatgcctcaagattaa------tggtgatgttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaagaaaga |
250506 |
T |
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