View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7003_high_15 (Length: 408)
Name: NF7003_high_15
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7003_high_15 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 30014101 - 30013801
Alignment:
| Q |
18 |
ctgatacaaggaggggttgtttccttgtgtggctcgctagcttatctcctatagctactgtttgtggtgtttttgctgttacggcgtgctgatttgttct |
117 |
Q |
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| T |
30014101 |
ctgatacaaggaggggctgtttccttgtgtggcttgctagcttatctcctatagctgctgtttgtggtatttttgctgttacagcgtgctgatttgttct |
30014002 |
T |
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| Q |
118 |
ttttgtaactagttcttttgtttattctgatagataactgcatctagtgacgacataatttgttgcttaagattctcatccgtaactaaggcatatgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
30014001 |
ttttgtaactagttcttttgtttattctgatagatagctgcatctagtgaggacataatttgttgcttaagattctcatcagtaactaaggcatgtgaaa |
30013902 |
T |
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| Q |
218 |
agttgttttgagctgttttttcatgtttttgctctaaactagaagcaaattttatgtatttcataagtactatttcgttgcaggtttcaatgttctgatt |
317 |
Q |
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| T |
30013901 |
agttgttttgagctgttttttcatgtttttgctctaaactagaagcaaactttccgtatttcataagtactgtttcattgcaggtttcaatgttctgatt |
30013802 |
T |
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| Q |
318 |
t |
318 |
Q |
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| T |
30013801 |
t |
30013801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 104 - 318
Target Start/End: Complemental strand, 30073599 - 30073386
Alignment:
| Q |
104 |
tgctgatttgttctttttgtaactagttcttttgtttattctgatagataactgcatctagtgacgacataatttgttgcttaagattctcatccgtaac |
203 |
Q |
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| T |
30073599 |
tgctgatttgttctttttgtaactagttcttttgtttattctgatatatagctgcatctagtgaggatataatttgttgcttaagattctcatcagtaac |
30073500 |
T |
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| Q |
204 |
taaggcatatgaaaagttgttttgagctgttttttcatgtttttgctctaaactagaagcaaattttatgtatttcataagtactatttcgttgcaggtt |
303 |
Q |
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| T |
30073499 |
taaggcatgtgaaaagttgttttgagctgt-ttttcatgtttttgctctaaactagaagcaaactttctgtatttcataagtactatttcattgcaggtt |
30073401 |
T |
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| Q |
304 |
tcaatgttctgattt |
318 |
Q |
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| T |
30073400 |
tcaatgttctgattt |
30073386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 8245 - 8348
Alignment:
| Q |
92 |
gctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagataactgcatctagtgacgacataatttgttgcttaagatt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |
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| T |
8245 |
gctgttacggcgtgctgatttgttctttttgtaactagttcttttgtttattctgatagatagttgcttctagtgaggacataatttgttgcttaagatt |
8344 |
T |
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| Q |
192 |
ctca |
195 |
Q |
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|||| |
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| T |
8345 |
ctca |
8348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 11225122 - 11225184
Alignment:
| Q |
331 |
gttgttcatgtaatataagagttacacattgttgataaaattctgcgagctgatgtttgatgtg |
394 |
Q |
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| T |
11225122 |
gttgttcatgtagtataagagttacacattgttgat-aaattctgcgaactaatgtttgatgtg |
11225184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 11224933 - 11224985
Alignment:
| Q |
331 |
gttgttcatgtaatataagagttacacattgttgataaaattctgcgagctgat |
384 |
Q |
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| T |
11224933 |
gttgtgcatgtagtataagagttacacattgttga-aatattctgcgaactgat |
11224985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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