View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7003_high_2 (Length: 919)

Name: NF7003_high_2
Description: NF7003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7003_high_2
NF7003_high_2
[»] chr1 (1 HSPs)
chr1 (1-899)||(6533274-6534172)
[»] chr3 (1 HSPs)
chr3 (1-77)||(52112585-52112661)


Alignment Details
Target: chr1 (Bit Score: 859; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 859; E-Value: 0
Query Start/End: Original strand, 1 - 899
Target Start/End: Original strand, 6533274 - 6534172
Alignment:
Q  1 tccatttcatcaaattagggaaaaacagcttcatcccgccaaaagaattaaaacatgttgcgaataatagattatgacaagcctcctcttttgaaacacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6533274 tccatttcatcaaattagggaaaaacagcttcatcccgccaaacgaattaaaacatgttgcgaataatagattatgacaagcctcctcttttgaaacatc 6533373  T
Q  101 caaacgctctgcttcctcaagagcaaatcccgaggaagcataaaagaaatcataaagtctttggtaatctttcttaatgagccgaaatggtagacgaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6533374 caaacgctctgcttcctcaagagcaaatcccgaggaagcataaaagaaatcataaagtctttggtaatctttcttaatgagccgaaatggtagacgaaaa 6533473  T
Q  201 ttatgtatcatagaatcttccacaaatttcggtaggcccagtttcagaactggacctaactgaaacaaaacccatttctgaaccatttttggaccgtcaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6533474 ttatgtatcatagaatcttccacaaatttcggtaggcccagtttcaaaactggacctaactgaaacaaaacccatttctgaaccatttttggaccgtcaa 6533573  T
Q  301 gtccaagtttggtgtcaacagggttaacaccgaacaaagcacggttcaagaaattaaatgcagcttgatcattattatcagcaaaactagcgttaccatt 400  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6533574 gtccaagttcggtgtccacagggttaacaccgaacaaagcacggttcaagaaattaaatgcagcttgatcattattatcagcaaaactagcgtgaccatt 6533673  T
Q  401 ttcagcaagttgattttccaaagcattaaaaaactctctgtaacatgactgaaactctggaataacatgacggctacgtgatttaaggagaaaaaacatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6533674 ttcagcaagttgattttccaaagcattaaaaaactctctgtaacatgactgaaactctggaataacatgacggctacgtgatttaaggagaaaaaacatc 6533773  T
Q  501 aacttcttgagctgttcatgttttggttcagaaggatcaaggtaagataaaactctataaccaccagtgagttctgtagaaggtgtgtatgtacctgtga 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6533774 aacttcttgagctgttcatgttttggttcagaaggatcaaggtaagataaaactctataaccaccagtgagttctgtagaaggtgtgtatgtacctgtga 6533873  T
Q  601 agacatcggttttatcgatcttcgatgcgtcaaagaggacggggaagcttttgccatcaaggaggacaacaacgttagggttttgagctatgaaaggacc 700  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6533874 atacatcggttttatcgatcttcgatgcgtcgaagaggacggggaagcttttgccatcaaggaggacaacaacgttagggttttgagctatgaaaggacc 6533973  T
Q  701 aggaggaacgttagtgcggaagatagttgactggtatttttggatacgtgatttgaagtattcatcacgaccttggttgtagaaatagtctaaacggtct 800  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6533974 aggtggaacgttagtgcggaagatagttgactggtatttttggatacgtgatttgaagtattcatcacgaccttggttgtagaaatagtctaaacggtct 6534073  T
Q  801 ttgtaaggttggatgaatgggatgccatagtcaccagggattttacggatcggaagtttggttgtttgtggttgagagatggagacttggaagggtggt 899  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6534074 ttgtatggttggatgaatgggatgccatagtcaccagggattttacggatcggaagtttggttgtttgtggttgagagatggagacttggaagggtggt 6534172  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 52112585 - 52112661
Alignment:
Q  1 tccatttcatcaaattagggaaaaacagcttcatcccgccaaaagaattaaaacatgttgcgaataatagattatga 77  Q
    |||| |||| ||||||||| ||||| | ||||||||| ||||| |||||||||||||| || ||||| |||||||||    
T  52112585 tccacttcaacaaattaggaaaaaaaatcttcatcccaccaaatgaattaaaacatgtggcaaataaaagattatga 52112661  T

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